Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00291 ATGGCGAAGGACTACCAGGATCCACCACTGGTGCCGCTAATAGACAGCATGGAGAGTAGGAAATGGTCGTTCTATAGAGCTCTGATTGAGGAGTTCATGGTGACTCTGCTCTTCCTGTATGTGACGGTGTTGACGATGATCGAGTACAAAGCGGAAACGCATGGTATGGGGAAGAAGAATGTGGATTCTTGTGGAGGAGTTGGGATTCTGGGAATTGCTTGGGCTTTTGGAGGAAAGATCTTCGTTCTTGTTTTCTGTACTGCTAGAATTTCAGGGGGCCACATAAACCCAGCAGTGACATTTAGGCTTCTGTTGAGGCGAAAGGTGTCACTCGTACGGGCCGTGATGTACATAGTGGCCCAATGTTTGGGGGCTATCAGTGGAGTTGGGCTTGTCAAGGCCTTCCAGAAGGCCCACTTCCAGAAGCACGGCGGCGAGGCTAATGGGGTTTCCTATGAGTACAGCATCGACACCGGACTGGCAGAGGAGATCGTTGGGAGTTTTGTGTTGATGTACACCGTCTTCTTCGCCACCGACCCTAAACGAAACGCCAGAGATTCCCATGTTCCGGTACACACACCTTAA 585 50.77 MAKDYQDPPLVPLIDSMESRKWSFYRALIEEFMVTLLFLYVTVLTMIEYKAETHGMGKKNVDSCGGVGILGIAWAFGGKIFVLVFCTARISGGHINPAVTFRLLLRRKVSLVRAVMYIVAQCLGAISGVGLVKAFQKAHFQKHGGEANGVSYEYSIDTGLAEEIVGSFVLMYTVFFATDPKRNARDSHVPVHTP* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3189958 3191363 + Chy12G208910.1 Chy12g00291 238072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00291 194 Pfam Major intrinsic protein 19 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy12g00291 194 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy12g00291 194 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy12g00291 194 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy12g00291 194 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy12g00291 194 Gene3D Glycerol uptake facilitator protein. 11 194 IPR023271 -
Chy12g00291 194 SUPERFAMILY Aquaporin-like 17 190 IPR023271 -
Chy12g00291 194 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 194 IPR034294 -
Chy12g00291 194 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 2 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00291 Chy-Chr12:3189958 Chy08g00833 Chy-Chr8:15840346 1.85E-92 dispersed
Chy12g00291 Chy-Chr12:3189958 Chy03g00960 Chy-Chr3:13152706 6.78E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00291 K09872 - csv:101205700 328.176