Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00307 ATGTCTCTCTCTCTTGCGGTTTCCAATTCCCCGGTATTTTCCCCTTCATCCATGTTCTGCAATAAGGCGTCCATCATTTCTCCGGCGCCGGAGGCGTTGACCATCACTTTAGCTCATTTGAAGTCATCTCAGGCTTCTTCCTCTTGCTCTTCTTCTTCTCCTTCTTCTCCTTCTTCCCCTTTCCGCATTCGCTTTCCGAAGCCCCCTTCTGGGCTTTCGGCAGCGGCCGCAGCGGTGGCGCTGGCTTCCACTTCTTCTCCTTCTTCGTCGTCGTCCAGCGCGATCTTGAAAAGGAAGAGACCCGCTAGGTTGGATATTCCGTTGACACCGTTGAGTTTTGGAGCTCCGGTGATGCCTTCACCGTCCTCGTATAGGGAGGTGGTGGAAGCCGAGAGAGATGGGTATTCTGTGTATTGTAAGAGAGGTAGGAGGAGAATTGCTATGGAAGATCGGTATTCTGCTGCTGTTGATATTGATGGAAATTCTAAAGAGGCGTTTTTTGGTGTATTTGATGGACATGGAGGTGCAAAGGCAGCTGAATTTGCAGCAAATAACTTAGAGAAGAATGTTTTGAATGAAATTGAGAGAATGGATGATAATGAAACTGATTTTGAACAAGCTATTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAGGATCAACGTGGTGGTTCTTGTTGTGTGACAGCCCTTATCAAGAAAGGCAACCTTGTTATTTCCAACGCCGGTGATTGTCGTGCCGTTCTCAGCAGCCAAGGTGTTGCCGAGGCCATCACTTCCGACCACCGCCCATCCCGGGAAGACGAAAGGCACAGGATCGAGTCCACGGGTGGATATGTTGATTTGTGCAATGGAATTTGGAGAGTCCAGGGATCTCTGGCTGTAACAAGAGGAATTGGGGATGCTCACCTCAAACAATGGGTGATAGCCGAACCGGAGACAAGGGCAATTCGTATCGAGCCACGACACGAGTTCTTGATCTTGGCCTCAGACGGATTATGGGAAACGGTGAGCAATCAAGAAGCAGTTGACATTGCATATCCATTGTGCGTAGGAATGGAGAAGGCAGAGCCATTAACGGCTTGTAAAAAGCTTGTGGAGCTTTCACTTTCAAGAGGTTCAGTTGATGACATTAGTGTAGTACTAATCCAATTGGCTAACTTCGTCTAA 1179 48.18 MSLSLAVSNSPVFSPSSMFCNKASIISPAPEALTITLAHLKSSQASSSCSSSSPSSPSSPFRIRFPKPPSGLSAAAAAVALASTSSPSSSSSSAILKRKRPARLDIPLTPLSFGAPVMPSPSSYREVVEAERDGYSVYCKRGRRRIAMEDRYSAAVDIDGNSKEAFFGVFDGHGGAKAAEFAANNLEKNVLNEIERMDDNETDFEQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKKGNLVISNAGDCRAVLSSQGVAEAITSDHRPSREDERHRIESTGGYVDLCNGIWRVQGSLAVTRGIGDAHLKQWVIAEPETRAIRIEPRHEFLILASDGLWETVSNQEAVDIAYPLCVGMEKAEPLTACKKLVELSLSRGSVDDISVVLIQLANFV* 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3345550 3347072 + Chy12G209070.1 Chy12g00307 238088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00307 392 ProSitePatterns PPM-type phosphatase domain signature. 166 174 IPR000222 GO:0043169
Chy12g00307 392 Gene3D - 135 391 IPR036457 -
Chy12g00307 392 MobiDBLite consensus disorder prediction 45 64 - -
Chy12g00307 392 Pfam Protein phosphatase 2C 141 381 IPR001932 -
Chy12g00307 392 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 391 - -
Chy12g00307 392 PANTHER PROTEIN PHOSPHATASE 2C 3 391 IPR015655 GO:0004722|GO:0006470
Chy12g00307 392 MobiDBLite consensus disorder prediction 45 60 - -
Chy12g00307 392 ProSiteProfiles PPM-type phosphatase domain profile. 134 388 IPR001932 -
Chy12g00307 392 Coils Coil 183 203 - -
Chy12g00307 392 SUPERFAMILY PP2C-like 133 389 IPR036457 -
Chy12g00307 392 CDD PP2Cc 134 388 IPR001932 -
Chy12g00307 392 SMART PP2C_SIG_2 153 388 IPR001932 -
Chy12g00307 392 SMART PP2C_4 127 386 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01706 Chy-Chr3:18639985 Chy12g00307 Chy-Chr12:3345550 9.54E-74 dispersed
Chy04g00256 Chy-Chr4:2272719 Chy12g00307 Chy-Chr12:3345550 4.52E-41 dispersed
Chy07g00835 Chy-Chr7:10720972 Chy12g00307 Chy-Chr12:3345550 8.66E-38 dispersed
Chy10g00398 Chy-Chr10:9603051 Chy12g00307 Chy-Chr12:3345550 9.50E-117 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00307 K17506 - csv:101207841 688.337