Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00308 ATGCTCAAAACCACCGCGCTTTCTTGGACTCGAAGTAATTCTCCCATCGGAAAAGGCTCCTTTGGCACCGTCTCTCTCGGAATTCGAAAACCCGACGCTCGGATTTTCGCCGTCAAATCTGTCGAGCAGAGTCAAAGATTCCGCCCACAAATCCACTGCTTAGAGAATGAAATTCGAATCCTCCGATCCTTGAACTCGCCTTACGTTCTTGCCTTTCTCGGCGATGATGTTTCCCATGAATCTCCCACCACCTCCTTTCGTAACCTGCATATGGAGTATTTGCCAGGTGGCACCGCCGCAGATGACCCCACTGGCACTCGCGATGACAATCTTTTACGGGACAGGACATGGTGCCTCGTTTCGGCTTTGAGTTACATTCATTCCAAAGGAATTGTTCACTGTGATGTAAAAGGGAGGAACGTTTTGATCGGATTGAATCCCGGGTTTGTCAAATTGGCTGATTTCGGCTCTGCAATTGAACTTCACGGCCCCGGCGACAGGTCTCGGGGTTCGCTTGCGCCACGTGGGAGTCCACTATGGATGGCGCCAGAGGTAGTCCGCGGAGAATTTCAGGGCCCGGAATCGGACGTTTGGTCCGTTGGGTGCACGGTCATTGAAATGGTCACCGGGAAACCCGCATGGGAAGATTTCGGAGCCGATACGCTCAGTCGAATCGGCTTTTCCGACGATTTGCCAGAGTTTCCAACATGCTTATCGGAGGTCTGCCGGGATTTCCTCCGGAAGTGTCTCAGAAGAAATCCTAGTGAACGGTGGAGCTGTGATCGGCTGCTGCAGCATCCATTTCTAGCGGCAGCGGCGGCGGCCTCGCCGAAGATTGCTGTAGAGAATTCCCCCAGGTGCGTTCTTGACTGGGTCAACGTCAGTTTCTCCGACGATGAGGAGGAAATTCCAAACGCTGACGAAGCCTCCGGATCCGGCGGCCAGGAAAATGAGATATATGGTAAGGAAAGAATTGGGAAATTGAGTACTACGAGTGAATGGCCAAATTGGGAATCGGACGGTTGGTCGGCGGTGAGAAGTAGTTACAGTGAAGCGGCGGCGGAGACAGAGGCGAGCTGCCGGAAAGAAGAAGAAGAAGAAGAAAAAGGCGGAGGGGCAGAATGGGAATGTGGAAATTTGAAAAGGGTAGAAGGGGAAATGGAAGGGACAAGTTGGGAATATTCGGAGTTTGTAAGAAGAGACAATCACGGAAAATTGGGAGCCGAATATTCAAATCCTGGCGGTATGATCATTCCGGAGCGGCCACGTAATAATTTCGGCGGTGGCGGCGGTTGCCGTAGCGGTGAATTAAGTTTACGGCGGTTGGGGTATGAAATATGTGAAATTACAACAATAATAACCTCGTGGATATACTCAATTGAATTGATATTATGTTGTTACTATTGGAATATATTAATGAAGAAATTGATGTTCTTTGGGAATTACACTTTCTTACCTTTCTTTTGTGCCTAA 1473 49.76 MLKTTALSWTRSNSPIGKGSFGTVSLGIRKPDARIFAVKSVEQSQRFRPQIHCLENEIRILRSLNSPYVLAFLGDDVSHESPTTSFRNLHMEYLPGGTAADDPTGTRDDNLLRDRTWCLVSALSYIHSKGIVHCDVKGRNVLIGLNPGFVKLADFGSAIELHGPGDRSRGSLAPRGSPLWMAPEVVRGEFQGPESDVWSVGCTVIEMVTGKPAWEDFGADTLSRIGFSDDLPEFPTCLSEVCRDFLRKCLRRNPSERWSCDRLLQHPFLAAAAAASPKIAVENSPRCVLDWVNVSFSDDEEEIPNADEASGSGGQENEIYGKERIGKLSTTSEWPNWESDGWSAVRSSYSEAAAETEASCRKEEEEEEKGGGAEWECGNLKRVEGEMEGTSWEYSEFVRRDNHGKLGAEYSNPGGMIIPERPRNNFGGGGGCRSGELSLRRLGYEICEITTIITSWIYSIELILCCYYWNILMKKLMFFGNYTFLPFFCA* 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3358260 3359732 + Chy12G209080.1 Chy12g00308 238089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00308 490 CDD STKc_MAPKKK 8 269 - -
Chy12g00308 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Chy12g00308 490 SMART serkin_6 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00308 490 ProSiteProfiles Protein kinase domain profile. 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00308 490 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 369 - -
Chy12g00308 490 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 5 369 - -
Chy12g00308 490 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Chy12g00308 490 Pfam Protein kinase domain 13 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00308 490 MobiDBLite consensus disorder prediction 300 319 - -
Chy12g00308 490 Gene3D Transferase(Phosphotransferase) domain 1 4 311 - -
Chy12g00308 490 SUPERFAMILY Protein kinase-like (PK-like) 14 297 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00308 Chy-Chr12:3358260 Chy02g00907 Chy-Chr2:5896049 2.49E-48 dispersed
Chy12g00308 Chy-Chr12:3358260 Chy11g00625 Chy-Chr11:7372794 1.35E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71605 PF00069 Pkinase 5.80E-52 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00308 - - csv:101203251 915.605