Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00355 ATGGACGGCGGGGGTGTGAGGTTGAAGGCGGCGAGTTCGAGCAATGGTGGAAGAACCCGCGTGGGAAAATACGAATTGGGTAAAACCCTTGGGGAGGGTAACTTTGCCAAGGTTAAGTTTGCTCGGAATTCGGAGACCGGGGAGAACGTGGCGATCAAAATTCTTGATAAGGAGAAAGTTCTTAAGCATAAGATGATCAGTCAGATTAAACGTGAGATATCAACCATGAAATTAATTAGGCATCCAAATGTCATCCGTATGATTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACTGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGGATGAAGGAAGATGAAACAAGAAAGTATTTTCAGCAACTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCACAGAGATCTAAAGCCGGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTGCCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACATGTGGGACACCAAATTATGTTGCTCCAGAGGTGATCAATAATAAAGGCTATGACGGGGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTGATGGCTGGTTATCTACCCTTTGAAGATTCCAACCTGGTTGCGTTGTATAAGAAGATACACAAGGCTGACTTCACCTGTCCACCATGGTTCTCTACAAACGCAAAGAAACTTATCAAAAGAATTCTGGATCCCAATCCCTCAACGAGAATTACTATTCCAGAGGTCATTGAGAATGAATGGTTTAGAAAAGGTTACAAGCCGCCTACTTTTGAACAAGCTGATATAAGTCTTGATGATGTGGACGCTATCTTCAACGAAACAGGGGTAAGCAAAGTACATTTGGGTATTTCTAATCCAACATTTAAGCATGATCTTCACAATACCCTTGGCATTCAGGATTCGGGTAGTCTTGTTGTGGAAAGGAAAGAGGAAGGATCTAAATCCCCTCTTACGATGAACGCGTTTGAGCTTATATCTAAATCTCAAGGTCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGAATTGTTAAACGGGAAACAAGGTTCACATCCAATCGACCTGCGAAAGAGATCCTTTCTAAAATTGAGGAAACTGCATTGCCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGCCATTTATCAGTGGCAACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAGTCTCAAGACTGGGCTGAAAGATATTGTCTGGAGACATGAAGAGGATCTGGATGAAGGAGATACTGGTGCTAGTGTCTCACAGTCGTCAAG 1466 41.75 MDGGGVRLKAASSSNGGRTRVGKYELGKTLGEGNFAKVKFARNSETGENVAIKILDKEKVLKHKMISQIKREISTMKLIRHPNVIRMIEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDETRKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGVSKVHLGISNPTFKHDLHNTLGIQDSGSLVVERKEEGSKSPLTMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETALPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKSLKTGLKDIVWRHEEDLDEGDTGASVSQSSX 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3797110 3804610 + Chy12G209550.1 Chy12g00355 238136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00355 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Chy12g00355 489 SUPERFAMILY Protein kinase-like (PK-like) 21 289 IPR011009 -
Chy12g00355 489 ProSiteProfiles NAF domain profile. 345 369 IPR018451 GO:0007165
Chy12g00355 489 CDD CIPK_C 351 466 - -
Chy12g00355 489 Pfam NAF domain 347 407 IPR004041 GO:0007165
Chy12g00355 489 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 18 475 - -
Chy12g00355 489 Gene3D Kinase associated domain 1, KA1 344 470 - -
Chy12g00355 489 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00355 489 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00355 489 Gene3D Transferase(Phosphotransferase) domain 1 17 332 - -
Chy12g00355 489 CDD STKc_SnRK3 23 278 - -
Chy12g00355 489 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Chy12g00355 489 PANTHER SERINE/THREONINE KINASE 18 475 - -
Chy12g00355 489 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00122 Chy12g00355 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00083 Chy-Chr12:837203 Chy12g00355 Chy-Chr12:3797110 1.24E-173 dispersed
Chy02g02012 Chy-Chr2:24062118 Chy12g00355 Chy-Chr12:3797110 0 transposed
Chy03g01288 Chy-Chr3:15914927 Chy12g00355 Chy-Chr12:3797110 0 transposed
Chy04g00166 Chy-Chr4:1462430 Chy12g00355 Chy-Chr12:3797110 3.12E-51 transposed
Chy04g02180 Chy-Chr4:26845684 Chy12g00355 Chy-Chr12:3797110 2.35E-47 transposed
Chy05g00039 Chy-Chr5:263124 Chy12g00355 Chy-Chr12:3797110 0 transposed
Chy06g00062 Chy-Chr6:425939 Chy12g00355 Chy-Chr12:3797110 0 transposed
Chy09g00062 Chy-Chr9:542110 Chy12g00355 Chy-Chr12:3797110 8.41E-10 transposed
Chy09g00979 Chy-Chr9:12492862 Chy12g00355 Chy-Chr12:3797110 1.11E-38 transposed
Chy11g01975 Chy-Chr11:25721564 Chy12g00355 Chy-Chr12:3797110 4.43E-89 transposed
Chy12g00355 Chy-Chr12:3797110 Chy02g00122 Chy-Chr2:884175 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71606 PF00069 Pkinase 7.60E-75 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00355 - - csv:101222334 904.82