Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00362 ATGAGGCTCTCTGCGGGTGGTTTTAGTCCTCAGGCTCCGGAAGGCGAGAGAAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCTGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCAGTCGTGTTGTTTATTTTCCACAAGGCCACAGTGAGCAGGTTGCTGCATCTACCAATAAAGAGGTTGATGCCCAGATTCCGAATTACCCAAGTTTACCGCCGCAGCTCATTTGTCAGCTTCACAACCTGACAATGCATGCAGATGCCGAGACAGATGAAGTATATGCTCAGATGACTCTGCAACCCTTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCTGAGTTGGGCACTCCAAGTAGGCAGCCAACGAATTACTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGAGGTTTTTCTGTTCCTCGCCGTGCTGCTGAAAAAGTATTCCCTCCTTTGGACTTCTCTATGCAGCCCCCAGCCCAAGAGCTGATTGCGAGGGACTTGCATGATAATGAGTGGAAATTTAGACATATATTTCGCGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTAGCTGGCGACGCTGTACTTTTTATCTGGAATGAGAAGAACCAATTACTCCTTGGAATTAGGCGTGCTAGTCGACCACAAACGGTGATGCCTTCATCTGTGCTGTCAAGTGATAGCATGCATCTAGGCCTTCTTGCTGCAGCGGCTCATGCAGCGGCTACCATCAGTCGGTTTACAATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGGCCAAATATGTGAAGGCAGTCTACCATACTCGTGTTTCTGTTGGCATGCGCTTTAGGATGCTGTTTGAAACGGAAGAATCAAGTGTTCGTCGTTACATGGGCACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCACATTGGCGCTCGGTTAAGGTTGGCTGGGATGAGTCGACAGCAGGAGAGCGACAGCCAAGAGTGTCTTTGTGGGAAATTGAACCACTAACAACGTTTCCAATGTATCCATCACCGTTTCCACTTAGGCTGAAGCGACCCTGGCCAACTGGACTGCCTTCTTTTGGCATCAAGGATAGTGACCTTGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGTGATCGCGGCATCCAATGTCTAAACTTTCAGGGAGCTGGGGTCTCACCATGGATGCAGCCAAGGCTTGATCCATCCATGATGGGTATGCAATCTGACATGTATCAAGTCATGGCTACTGCAGCTCTTCAGGAGATGAGGGCAATTGATTATTCCAAAATATCACCTGCATCTGTTCTTCAATTCCAGCAGCCCCAAAGCCTTCCTTGTCAGTCTTCTACCTTAATGCAGCCTCAGATGTTGCATCAGTCTCAACCTCAGCAGGCGTTTCTACAATCCGTTCAAGAAAACCAGCAGCAGCCGCAGTCTCAGTCTCAAACTCAGTCGCATCATCTTCAGCCGCAATTGCAGCCCCAGCAATCATTCAATAATCATTCACAGCAACATCAACAGCAACCAAGGCAGACGCAACCACTCGATCATCAGCAGATTCCTTCTATCCCTGCTATATCTCAGTTTGCTTCATGTTCTCAATCCCAGTCACCGTCCTTGCAAACTGTCCCTTCCCTTTGCCAACAACCAAGTTTTTCTGATTCCAATGGTAACCCTGCAACTAGTCCTACTGTTTCCCCATTGCATAGCCTTGCGGGTTCGTTTGTGCAAGATGACTCTTCTCAGCTGCTTAACCTTCAAAGGGCACATTCAGTAATTCCTTCAGCTGGTTGGCCATCAAAGAGAGCTGCTATCGATCCTCTCTGTACTGGAGCTTCTCAATATTTTCTACCTCAAGTTGAAATATTGGGAACACAACAGAGTAGTATTTCTCAGAATACTGTTGCATTGCCACCCTTTCCTGGAAGGGAATGTCCTATTGATGATAGAGAAGAGAGTTCTGATCCTCAAAACCATGTTTTATTTGGTGTGAATATAGATTCTTCATCCCTTCTAATGCAAAATGGGATGTCAAACCTTAGGGGAGTTTGCAATGATAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGTACCAATTTTTCTGTAAATCCAACTATGACATCCTCGAATTGTATCGATGAATCGGGTCTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCCACCCAACGGAACCTTTGTCAAGGTTCACAAATCGGGGACCTACAGTAGGTCGTTAGACATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCTTAGAAGGCGAGTTGGAAGATCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACGTTCTTCTTCTCGGTGATGGCCCGTGGCCGGAGTTTGTAAACAGTGTGTGGTGCATCAAAATACTTTCACCAGAAGAAGTTCAGGACATGGGAAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCGAACAGCACCTGCGACGACTATGGCAGTCGACAGGACTCAAGAAATTTGATTTCAGGGATAGCCTCTGTCGGGCCTCTTGACTACTGA 2700 46.96 MRLSAGGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATISRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGAGVSPWMQPRLDPSMMGMQSDMYQVMATAALQEMRAIDYSKISPASVLQFQQPQSLPCQSSTLMQPQMLHQSQPQQAFLQSVQENQQQPQSQSQTQSHHLQPQLQPQQSFNNHSQQHQQQPRQTQPLDHQQIPSIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPATSPTVSPLHSLAGSFVQDDSSQLLNLQRAHSVIPSAGWPSKRAAIDPLCTGASQYFLPQVEILGTQQSSISQNTVALPPFPGRECPIDDREESSDPQNHVLFGVNIDSSSLLMQNGMSNLRGVCNDSVSTTLPFSSNYMSTAGTNFSVNPTMTSSNCIDESGLLQSHENVGQVNPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGIASVGPLDY* 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3963674 3968963 - Chy12G209620.1 Chy12g00362 238143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00362 899 SMART B3_2 127 229 IPR003340 GO:0003677
Chy12g00362 899 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Chy12g00362 899 Gene3D - 764 855 - -
Chy12g00362 899 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Chy12g00362 899 Gene3D - 291 363 - -
Chy12g00362 899 MobiDBLite consensus disorder prediction 562 594 - -
Chy12g00362 899 MobiDBLite consensus disorder prediction 483 545 - -
Chy12g00362 899 Gene3D - 125 228 IPR015300 -
Chy12g00362 899 ProSiteProfiles PB1 domain profile. 766 850 IPR000270 GO:0005515
Chy12g00362 899 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 878 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy12g00362 899 Pfam AUX/IAA family 757 855 IPR033389 -
Chy12g00362 899 PANTHER AUXIN RESPONSE FACTOR 6 1 878 - -
Chy12g00362 899 CDD B3_DNA 126 227 IPR003340 GO:0003677
Chy12g00362 899 SUPERFAMILY CAD & PB1 domains 756 841 - -
Chy12g00362 899 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Chy12g00362 899 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01328 Chy-Chr11:19476458 Chy12g00362 Chy-Chr12:3963674 1.10E-17 dispersed
Chy12g00362 Chy-Chr12:3963674 Chy02g00267 Chy-Chr2:1738800 1.17E-101 dispersed
Chy05g00847 Chy-Chr5:12113720 Chy12g00362 Chy-Chr12:3963674 2.72E-28 transposed
Chy05g01480 Chy-Chr5:18553235 Chy12g00362 Chy-Chr12:3963674 0 transposed
Chy09g01306 Chy-Chr9:15004646 Chy12g00362 Chy-Chr12:3963674 2.12E-23 transposed
Chy12g00362 Chy-Chr12:3963674 Chy02g00116 Chy-Chr2:835963 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18832 PF02309 AUX_IAA 3.10E-07 CL0072 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00362 - - csv:101211705 1699.87