Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00385 ATGGCTCTTGTCATGCATAGAGATTCCTTGAATAAGCAGATGGATACAAGCAAGTATGTGAGATATACGCCTGAACAAGTCGATGCATTAGAAAGGGTTTATGCAGAATGTCCAAAACCCAGTTCGTTGAGGAGGCAACAGCTCATTCGGGAGTGTCCCATTCTCTCTAATATTGAGCCTAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTTAATAGGAAGTTAACTGCAATGAACAAGCTGTTGATGGAAGAGAATGACCGTTTGCAGACGCAGGTCTCTCGTTTGGTTTACGAGAATGGATACATGAGACAGCAACTGCATACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACAGCATCAACAGCAAAACCCAACTAAGCATACTCAAAAGGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCCGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCGACAGGGACTGCTGTCGACTGGGTACAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCCCGCAATTGCAATGGGGTAGCAGCACGAGCCTGTGGTTTAGTGAGTCTTGAGCCCATGAAGGTGGCCGAAATTCTCAAAGATCGTCTGTCATGGTTTCGCGACTGCCGTTGTGTTGATGTTCTAAGTGTAATCTCTACAGGAAATGGAGGGACCATAGAACTCTTATATATGCAGACATATGCACCTACAACTTTAGCCTCAGCACGTGACTTTTGGACTCTTCGATACACTACAAGCTTGGAAGATGGCAGCCTTGTGATATGTGAGAGATCATTAACATCGTCTACTGGTGGTCCATCAGGGCCCCCTCCATCCAGTTTTGTAAGAGCTGAAATGCTTCCAAGTGGGTACCTTATTCGAGCTTGTGAGGGTGGTTCTCTTATTCACATTGTCGATCATGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTTCTAAGGCCCCTTTATGAATCAACAAAGATTCTAGCTCAGAGAACAACCGTTGCTGCCTTACGCTATGTTCGGCAAATTGCTCAAGAGGCGAGTGGTGAAGTTCAGTTGGGTGGGGGCCGCCAACCTGCTGTTTTAAGGACTTTCAGTCAAAGACTTTGTAGGGGTTTTAATGATGCTGTAAATGGATTTGTGGATGATGGTTGGTCGCTTATGGATAGCGATGGAGTTGAGGACGTGACAGTTGTTATTAATTCATCTCCAAACAAATTCCTCGGTTCACAATATAACACATCATTATATCCTACTTTTGGAGGTGTATTATGTGCCAAGGCATCGATGTTGCTCCAGAATGTTCCCCCTGCTTTGCTTGTTCGTTTCCTACGGGAGCATCGCTCAGAATGGGCTGATTATGGAGTCGATGCATACTCTGCTGCATGTCTTAAAGCCAGTGCATATGCTGTTCCGTGTGCGAGACCTGGTGGCTTCCCTGGTGGTCAGGTCATTTTACCACTTGCACATACGGTTGAGAACGAGGAGTTCTTGGAGGTTGTTCGGTTAGAGGGCCATGCTATGTTCCCTGAAGAAGCTGCATTAGGAGGACGGGATATGTATTTATTGCAGCTGTGTAGTGGGGTCGATGAAAATACAGTTGGTGCCTGTGCTCAGCTTGTATTTGCACCTATAGACGAATCATTTGCTGATGATGCTCCCTTGCTGCCGTCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACAGAGATGCCTGGGGCTACTCGAACTTTGGATTTGGCATCTACTCTAGAAGTCCGACCTGGGACTAATCGTCCAGGATGTGAAACTGATGTTACAAACTACAACCTTAGGTCGGTCTTGACTATTGCATTCCAATTCACTTTTGAGAACCACATGCGGGATAGTGTGGCTGCTATGGCGAGACAATATGTGCGAACTGTTGTGGGGTCAGTTCAAAGGGTTGCCATGGCTATTGCTCCCTCGCAGCTTGGCTCCCAGATCGGTCCAAAAAGCCTTCCTGGCTCCCCTGAGGCTCTCACATTAGCTCAGTGGATCACACGAAGCTATAGAATCCACTCAGGGGCAGAGCTCTTTCAAGTTGAATCTCAATCTGGTGATGCTATATTGAAGCAGCTTTGGCACCACTCAGATACAATCTTGTGCTGCTCTGTCAAAACAAATGCATCTCCGGTATTCACATTTGCAAACCAAGCTGGACTTGACATGCTGGAAACTACCCTTGTTTCTCTTCAAGATATAACGCTCGACAAGATTCTCGATGATGCTGGTAGGAAGATACTGTGCTCCGAATTCTCCAAGATAATGCAACAGGGATTTGCATACCTTCCAGCAGGGATATGCGTCTCGAGTATGGGCAGACCGGTGTCGTATGAACAGGCTATTGCCTGGAAAGTTCTGAATGATGATGATGTCCATCACTGTCTGGCATTCATGTTTGTAAACTGGTCCTTTATGTGA 2535 46.15 MALVMHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQTQVSRLVYENGYMRQQLHTASGTTTDNSCESVVMSGQQHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPMKVAEILKDRLSWFRDCRCVDVLSVISTGNGGTIELLYMQTYAPTTLASARDFWTLRYTTSLEDGSLVICERSLTSSTGGPSGPPPSSFVRAEMLPSGYLIRACEGGSLIHIVDHVDLDVWSVPEVLRPLYESTKILAQRTTVAALRYVRQIAQEASGEVQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDSDGVEDVTVVINSSPNKFLGSQYNTSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASAYAVPCARPGGFPGGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDENTVGACAQLVFAPIDESFADDAPLLPSGFRVIPLESKTEMPGATRTLDLASTLEVRPGTNRPGCETDVTNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVGSVQRVAMAIAPSQLGSQIGPKSLPGSPEALTLAQWITRSYRIHSGAELFQVESQSGDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVSLQDITLDKILDDAGRKILCSEFSKIMQQGFAYLPAGICVSSMGRPVSYEQAIAWKVLNDDDVHHCLAFMFVNWSFM* 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4527977 4534507 + Chy12G209850.1 Chy12g00385 238166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00385 844 CDD homeodomain 18 78 IPR001356 GO:0003677
Chy12g00385 844 SMART HOX_1 15 81 IPR001356 GO:0003677
Chy12g00385 844 Pfam MEKHLA domain 699 843 IPR013978 -
Chy12g00385 844 MobiDBLite consensus disorder prediction 126 156 - -
Chy12g00385 844 ProSiteProfiles START domain profile. 156 383 IPR002913 GO:0008289
Chy12g00385 844 CDD bZIP 70 109 - -
Chy12g00385 844 Gene3D - 185 375 IPR023393 -
Chy12g00385 844 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Chy12g00385 844 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Chy12g00385 844 Coils Coil 87 107 - -
Chy12g00385 844 SUPERFAMILY Bet v1-like 166 376 - -
Chy12g00385 844 Pfam START domain 166 373 IPR002913 GO:0008289
Chy12g00385 844 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Chy12g00385 844 Gene3D - 10 84 - -
Chy12g00385 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 844 - -
Chy12g00385 844 SUPERFAMILY Bet v1-like 413 599 - -
Chy12g00385 844 SMART START_1 165 374 IPR002913 GO:0008289
Chy12g00385 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 844 IPR044830 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00094 Chy12g00385 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00157 Chy-Chr4:1390214 Chy12g00385 Chy-Chr12:4527977 0 dispersed
Chy11g00810 Chy-Chr11:11625569 Chy12g00385 Chy-Chr12:4527977 0 dispersed
Chy12g00385 Chy-Chr12:4527977 Chy12g00776 Chy-Chr12:12088691 0 dispersed
Chy12g00385 Chy-Chr12:4527977 Chy02g00094 Chy-Chr2:600150 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18833 PF01852 START 4.00E-51 CL0209 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00385 K09338 - csv:101211318 1654.42