Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00386 ATGAGTCATTTTCCTGGGGATTTTAGAAGACCTGAATCAGCTAAAAGTAGATTGAAAGATTTATTGCTTCAGATAGATAATCAACTTTGTGCGGATTGTGGTGCCCCAGATCCCAAATGGGCCTCTGCGAATATCGGTGTGTTTATTTGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACATATTTCAAAGGTTTTGTCAATAACATTGGATGAATGGTCAGACGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCAGCTAATGCAATATACGAGGCTTTTATCCCTGATGGATATACAAAGCCTGGACCAAGTGCCAGCCATGAGGAGCGTTCAAATTTCATTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGCGAATTGTATCCAATAACTCCTCAAAGAGTTCTGAGGAGCCAAGTTATTTTCAAGAGATCACTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAGGAAGGCATGGTTGAATTTATGGGATTATTGAAAGTTAAGGTGATTAAAGGCACAAACTTAGCTGTGAGAGATGTGAAGACCAGTGATCCTTTTGTTACCTTAACTCTTGGACAACAGACTGCTAAAACAAAGGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTTTCGGTTCCTCTGGAATATGGACCCTTGAAGTTGCAAGTGTTCGATCACGACATAATTTTATCTAATGACTTGATGGGCGAAGCAGAAATCGACCTCCAACCGATGATAACATCAGCAATAGCATTTGGAGATGCTGAAATGCTTGAGAATATGCAGATTGGAAAATGGTTGAAGTCAGATGACAATGCTCTCGTCGATGACAGTGCTGTCGCCATCGTTGACGGGAAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAAGTGCAGTTGGAACTAGAATGGATACCTATTGATCAATAA 1002 40.62 MSHFPGDFRRPESAKSRLKDLLLQIDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPDGYTKPGPSASHEERSNFIRSKYELQEFLKPSLRIVSNNSSKSSEEPSYFQEITDSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKTSDPFVTLTLGQQTAKTKVIKSNLNPVWNEELMLSVPLEYGPLKLQVFDHDIILSNDLMGEAEIDLQPMITSAIAFGDAEMLENMQIGKWLKSDDNALVDDSAVAIVDGKVKQEVSLKLQNVESGEVQLELEWIPIDQ* 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4545430 4549492 + Chy12G209860.1 Chy12g00386 238167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00386 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 143 IPR001164 GO:0005096
Chy12g00386 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 9 333 - -
Chy12g00386 333 SMART C2_3c 178 273 IPR000008 -
Chy12g00386 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Chy12g00386 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Chy12g00386 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Chy12g00386 333 SUPERFAMILY ArfGap/RecO-like zinc finger 16 132 IPR037278 -
Chy12g00386 333 Pfam Putative GTPase activating protein for Arf 17 131 IPR001164 GO:0005096
Chy12g00386 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 331 IPR035892 -
Chy12g00386 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 333 IPR044518 GO:0005096|GO:0005543
Chy12g00386 333 CDD ArfGap 18 124 - -
Chy12g00386 333 ProSiteProfiles C2 domain profile. 160 276 IPR000008 -
Chy12g00386 333 SMART arf_gap_3 16 137 IPR001164 GO:0005096
Chy12g00386 333 CDD C2_ArfGAP 177 320 - -
Chy12g00386 333 Pfam C2 domain 177 266 IPR000008 -
Chy12g00386 333 Gene3D C2 domain 175 333 IPR035892 -
Chy12g00386 333 Gene3D Arf GTPase activating protein 7 136 IPR038508 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00089 Chy12g00386 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00386 Chy-Chr12:4545430 Chy12g01395 Chy-Chr12:18082373 1.02E-36 dispersed
Chy04g00335 Chy-Chr4:2974920 Chy12g00386 Chy-Chr12:4545430 4.61E-10 transposed
Chy04g00596 Chy-Chr4:6557475 Chy12g00386 Chy-Chr12:4545430 3.79E-27 transposed
Chy04g01703 Chy-Chr4:23448782 Chy12g00386 Chy-Chr12:4545430 2.10E-08 transposed
Chy05g01357 Chy-Chr5:17682305 Chy12g00386 Chy-Chr12:4545430 4.90E-09 transposed
Chy07g01544 Chy-Chr7:19670257 Chy12g00386 Chy-Chr12:4545430 3.54E-19 transposed
Chy10g01357 Chy-Chr10:17812983 Chy12g00386 Chy-Chr12:4545430 1.77E-116 transposed
Chy12g01370 Chy-Chr12:17900373 Chy12g00386 Chy-Chr12:4545430 1.79E-27 transposed
Chy12g00386 Chy-Chr12:4545430 Chy02g00089 Chy-Chr2:571771 1.80E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00386 K12486 - csv:101211569 630.172