Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00390 ATGTCTTTTCTTCGACCTTACGGTAAGGTCGATGAAACCGACCAATTGAGGCTCGACGCTAGCCGGAGGACTCGTAGGAGGATTGTTGTCATTGTTTTATCCTCTGTTGTTCTTGTTGCTGTTGTTGTTGCTGTTGTTTTTGGTACTAGAAATGCTTCTAATAACAATGATGACAGTAACAATCAAAATGGTTCTCTTTCAACTTCAATCAAAGCAGTTTGTGATGTGACATTGTATCCTGATACATGTCAAAAGGCTTTTGGTCCAATAGCTAACTCGAGCCACCTCGATCCCGGTCAAATATCGAAGCTTTCGGTTCAATTGGCTCTCGGTGAATTATCAAAAGTGGCTAACTACATTTTTGATCATGCTATTACCAATACAGCTGACAACAAGACCATATTGGCTTTGAAAAATTGTCATGAACTTTTGGACTTAGCTTTGGATCATTTGAATATCTCATTGTCTTCTAGTGATATTACGTTACTGAAAGCTGTGGATGATTTGAAAACATGGATAACTTCAGCAGCCACTTACCAACAGACTTGCATCGATGGTCTTGCTGAAGTCGATCCTGCTTTGGCAGACCTCGTTGCAAATTTCTTGAAGAACTCCACTGAGTTGACTAGTAATGGACTTGCCATTGTGTCGTTCTTTTCGAAGCTAACGGATTCTTTAAGTCTACGACGATTGATGAGTTATGAAGACCATCAAAGCTATGGAGATTGGGCACGTCCAATTCTCCGAAAGCTGGCTCAAAGTGATATCAGGAAGCAGGCTGACATTGTTGTAGCGAAAGACCGTTCGGGGAAGTACAAAACAATCACTGAAGCTCTCAAGGCTGTTCCTGATAAGAGCAAGAAGAGAACTGTAATTTATGTGAAGAAGGGAACTTACAAGGAGAACGTTGAAGTTGTGAAGAACAAATGGAATGTGGTTATGGTTGGCGATGGAATGAATGCAACCATAGTAAGTGGCAACCTTAATGTCGTAGATGGAACACCAACATTTTCAACTGCAACATTTGCTGCGAAGGGAAAAGGCTTCATTGCTATAGACATGGGATTCATAAACACGGCTGGACCGAGCAAACACCAAGCAGTCGCTCTGATGTCAACATCTGACCAATCGATCTTCTACCGTTGTGAAATGAATGCATACCAAGACACTCTCTACGCACACTCCAACCGTCAATTCTACCGTGAATGTAAGGTTTACGGCACAGTTGATTTCATCTTTGGAAACTCGGCAGTAGTCCTACAAAACTGCACCATTGCACCAAGGTTGCCTCTTTTAGGCCAAAAGAACACAATCACTGCTCAAGGCAGGTTTGATCCTAATCAAAACACTGGCATTTCGATACAAGGTTCTTTGATCCAACCGTTCGACGACTTGAAAACAACCGAAACTTACCTCGGTCGTCCATGGAAGAACTACTCGACGACCGTGTTTATGCAAAGTAATTTTGGGAGGTTGATTCACCCAACTGGTTGGCTGCCATGGGTTGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAATTATGGCCCTGGTTCTTCCACATCCAAAAGAGTTAAATGGAAGGGTGTCAAGAACATTGACATTAAAACTGCCAAAAAGTTCACAGTTTCTTCCTTCATTGATGGTAAAGATTGGATCTCAAAGGCACAAGTTCCCTTCACTGCCACTCTCTGA 1704 42.25 MSFLRPYGKVDETDQLRLDASRRTRRRIVVIVLSSVVLVAVVVAVVFGTRNASNNNDDSNNQNGSLSTSIKAVCDVTLYPDTCQKAFGPIANSSHLDPGQISKLSVQLALGELSKVANYIFDHAITNTADNKTILALKNCHELLDLALDHLNISLSSSDITLLKAVDDLKTWITSAATYQQTCIDGLAEVDPALADLVANFLKNSTELTSNGLAIVSFFSKLTDSLSLRRLMSYEDHQSYGDWARPILRKLAQSDIRKQADIVVAKDRSGKYKTITEALKAVPDKSKKRTVIYVKKGTYKENVEVVKNKWNVVMVGDGMNATIVSGNLNVVDGTPTFSTATFAAKGKGFIAIDMGFINTAGPSKHQAVALMSTSDQSIFYRCEMNAYQDTLYAHSNRQFYRECKVYGTVDFIFGNSAVVLQNCTIAPRLPLLGQKNTITAQGRFDPNQNTGISIQGSLIQPFDDLKTTETYLGRPWKNYSTTVFMQSNFGRLIHPTGWLPWVGTSAPDTIFYAEFQNYGPGSSTSKRVKWKGVKNIDIKTAKKFTVSSFIDGKDWISKAQVPFTATL* 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4598161 4600215 - Chy12G209900.1 Chy12g00390 238171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00390 567 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 24-RELATED 19 563 - -
Chy12g00390 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 220 IPR035513 -
Chy12g00390 567 PANTHER PECTINESTERASE 19 563 - -
Chy12g00390 567 SUPERFAMILY Pectin lyase-like 259 566 IPR011050 -
Chy12g00390 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 219 IPR035513 -
Chy12g00390 567 SMART PMEI_2 65 215 IPR006501 GO:0004857
Chy12g00390 567 CDD PMEI-like_3 72 221 - -
Chy12g00390 567 Pfam Plant invertase/pectin methylesterase inhibitor 69 215 IPR006501 GO:0004857
Chy12g00390 567 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Chy12g00390 567 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Chy12g00390 567 TIGRFAM PME_inhib: pectinesterase inhibitor domain 41 216 IPR006501 GO:0004857
Chy12g00390 567 Pfam Pectinesterase 261 552 IPR000070 GO:0030599|GO:0042545
Chy12g00390 567 Gene3D - 256 567 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00725 Chy-Chr4:8913355 Chy12g00390 Chy-Chr12:4598161 5.61E-159 dispersed
Chy11g01528 Chy-Chr11:21877871 Chy12g00390 Chy-Chr12:4598161 2.40E-137 dispersed
Chy12g00390 Chy-Chr12:4598161 Chy09g01437 Chy-Chr9:15944062 2.76E-136 dispersed
Chy12g00390 Chy-Chr12:4598161 Chy08g01044 Chy-Chr8:17539007 1.48E-149 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00390 - - csv:101210577 1025.0