Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00393 ATGACGTCTTTTGTAAAGCCAGAGAATGCTTTAAAACGTGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCTCTTCATGATCTTATAACTTCAAAGAGATATCGAGCATGGCAGAAACCCCTTGAGAGGATTATGTTTAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCAAAGGATGGATTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTGGAGGAAGTAATCAAGCATTTTCTGCATCTTTCAACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCTTTGGACGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAGGATAGATCTGATCGTGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTTCTGGAGATACTGCGAAATAATTCAAAGTTGGAGGCACTTTATGCG 528 40.91 MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFLHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYA 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4622834 4624044 + Chy12G209930.1 Chy12g00393 238174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00393 176 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 176 - -
Chy12g00393 176 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 176 IPR027512 GO:0005852
Chy12g00393 176 Coils Coil 93 120 - -
Chy12g00393 176 Coils Coil 161 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00393 Chy-Chr12:4622834 Chy12g00395 Chy-Chr12:4636667 3.02E-120 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00393 K03254 - csv:101215735 345.895