Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00394 ATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGGGATCTTCTGGAAATCAGATAGCAATCTTTATCATGCTTATGCATGGCTTAAACTTTTCTCCATTCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTGATAGCTTCGTCGGTTCTTTTAGCAGCTCTTGCAGTGTCCCCCTATGACTCTAAGCATAGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGAGGAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCGAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGCGCAATTCAGGATGTTAAAGATCTCTATCATCTTTTGGAGCATGAGTTCTTTTCTCTTGATCTTGCAATAAAGTTGCAACGCTTACTTGACAAAATATCGAAGCTTGGAGGTAAGCTTTCATCCGCTTCATCGGTCCCTGAAGTGCAATTATCCCAATATGTCCCGGCTCTTGAAAAGCTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGATGTATCAAACTATGAAAATTGAGAGCTTATTGCGGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCATGAAAGTTGATCATTCGAGGAACATTGTGCTATTTGGCGATTTGGTTATTGAATCAGATGAGCATCGAGACCACCTGACTGTTCTTGCTGAATCCCTTAACAAAGCAAGAGCTATGATCTATCCTCCAGTTAGGAAAGCCTCAAACACAGATGATATATTGCCTGATTTGGCCGATATTGTTGATAACGAGCACAGGAGGTTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGTCAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAATTACTGAAGATAACTGAAGAAGCCGAGCAGAAGCGGCTTGCTGCAGAATATGAACAAAGGAAAAACCAACGACTTCGTAGGGAAATAGAAGAGCGAGAACTTGAAGAAGCACAGGCTCTACTTCAAGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAACCGGTTCTTGATTCGGAAAAATTGTCGAAACAAACTTTAATGGAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAAAAGCTAGCTAAAACTATGGATTATCTGGAAAGAGCAAAAAGAGAAGTGGCGGCACCATTAATTGAAGCTTCATTTCAGCAACGTTTGCTGGAAGAGAGAATGGTTCATGAACGTAATCAGCAGCTGGAGGTCAAGATAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGATTGGCGAGAATGTTGGAGAGTAAGAAAAGTTTCCAAGAAAGAGTAATTAGTCTTCGCCAAGAGGAATTCAGCAGACGTAGAGCTGAGAGAGAAGAACATATCAGGCAAATAATTGAGGCTCGGAAAGCAGAAAGGGAGGTTAAGAGGAAGAAAATCTTTTATGTAAGACGTGAGGAGGAGAGAATTAGAATATTACGTGAAGAGGAGGAAGCTCGCAAGCGTGAAGAGGCCGAGAGGAGAAAGAGGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAAATTGCAGAGAAGCAGAGACAGAGGGAGCGAGAATTGGAAGAAAAAGAAAGATTGAGGAAACAAAGTCTCTTTGGTGCTGCCAGATCAGCTGATGCACCTGCTAGACCTGACATTGCTCCTGGCTCTCGACCTCTGGAGTCTGGGACTGCTGCTCCTGCCGCTGCTGCAGCTGCCGCACCATCCCCAGCAAAATATGTGCCAAAGTATCGACGAACTGAAGGCTCCAGCCCTAATGCACCACCACCTGAATCTGATCGATGGGGAGGCAGCCAGGCTGATAATCGACCATCTCAACCAGATAGTTGGCGCAGTGATGACCGTAGACCTGCGTTGGGAAGTTCAAGGACATCGTGGTCCTCATCCCGAGTTCGTCCGAACCGCTGA 2109 43.62 MVKKTPKPSLMVVYYVKLTGIFWKSDSNLYHAYAWLKLFSIQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHSASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCAIQDVKDLYHLLEHEFFSLDLAIKLQRLLDKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKMYQTMKIESLLRMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNIVLFGDLVIESDEHRDHLTVLAESLNKARAMIYPPVRKASNTDDILPDLADIVDNEHRRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLSKQTLMELALTEQLRERQEMEKKLQKLAKTMDYLERAKREVAAPLIEASFQQRLLEERMVHERNQQLEVKISKQRHEGDLKEKNRLARMLESKKSFQERVISLRQEEFSRRRAEREEHIRQIIEARKAEREVKRKKIFYVRREEERIRILREEEEARKREEAERRKREEAERKAKLDEIAEKQRQRERELEEKERLRKQSLFGAARSADAPARPDIAPGSRPLESGTAAPAAAAAAAPSPAKYVPKYRRTEGSSPNAPPPESDRWGGSQADNRPSQPDSWRSDDRRPALGSSRTSWSSSRVRPNR* 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4624348 4635082 + Chy12G209940.1 Chy12g00394 238175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00394 702 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 179 270 - -
Chy12g00394 702 Coils Coil 407 437 - -
Chy12g00394 702 Coils Coil 341 387 - -
Chy12g00394 702 MobiDBLite consensus disorder prediction 553 597 - -
Chy12g00394 702 Gene3D - 4 84 - -
Chy12g00394 702 Gene3D - 100 232 - -
Chy12g00394 702 Coils Coil 470 503 - -
Chy12g00394 702 Coils Coil 537 596 - -
Chy12g00394 702 MobiDBLite consensus disorder prediction 553 702 - -
Chy12g00394 702 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 648 IPR027512 GO:0005852
Chy12g00394 702 ProSiteProfiles PCI domain profile. 54 251 IPR000717 -
Chy12g00394 702 Pfam PCI domain 112 247 IPR000717 -
Chy12g00394 702 MobiDBLite consensus disorder prediction 686 702 - -
Chy12g00394 702 SMART PINT_4 179 270 IPR000717 -
Chy12g00394 702 Coils Coil 299 338 - -
Chy12g00394 702 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 648 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00394 Chy-Chr12:4624348 Chy12g00395 Chy-Chr12:4636667 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00394 K03254 - csv:101215504 1092.03