Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00395 ATGGCGTCTTTTGTCAAGCCAGAGAATGCTTTAAAACGAGCCGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCGCTTCATGATCTTATCACTTCGAAAAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTTAAATATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTGATTCAATATCGTATTGTTTGCCAGCAAGTCAATGTTACTTCCTTGGAGGAAGTAATCAAGCACTTCATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTACTCAAGCTCAAGCCTTAGAAGAAGCACTGGACGTTGATGATTTGGAAGCTGATAAAAGACCGGAAGATCTGATGCTTAGTTATGTTAGTGGTGAAAAGGGAAAAGATAGATCTGATCGTGAACTTGTTACCCCCTGGTTTAAATTTCTGTGGGAGACATATCGAACGGTTCTTGATATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTCTGTAAAGTGTATAAAAGAACAACAGAATTTCGTAGGTTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAATAAGTATAGAGACCAAAGGGATCGGCCTGATCTTTCTGCCCCAGAGAGTTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGATTGATGTGCATGGTGAAGAAAACACCCAAACCATCTTTGATGGTGGTGTATTACGTCAAATTAACAGAGATTTTCTGGATATCAGATAGCAATCTTTATCATGCTTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATTTAAGCCAGAAGGATTTGCAGCTGATAGCTTCTTCTGTTCTTTTAGCAGCACTTGCAGTGTACCCCTACGACTCTAAGCATGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAACGGAATTTGAGGATGGCCAATCTTATAGGGTTCAGTTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGAAAATCTTTTTTCTGAACTGGTGTCTAAAGGAGTCCTAAGCTGTGCAACTCAAGAAGTTAAAGATCTTTATCATCTTTTGGAGCACGAATTCTTCCATCTTGACCTTTCAACAAAACTGCAACCCTTGCTAAACAAAGTGTCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTCCAATTGTCCCAATATGTTCCTGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCACACTATGAAAATTGAGAGTCTGTCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGGCATGAAAGTTGATCATTCGAGGAACATTGTGTTATTTGGCAATTTGGGTATCGAATCAGATGGGCTTCGGGACCATCTAACTGTTTTCGCAGAATCCTTAAACAAAGCAAGAGCTATGATCTATCCTCCAGTTTTGAAGGCATCAAAAACAGGTGATATATTGCCTGATTTAGCAGATATTGTCGATAAGGAGCACAAGAGGCTCCTTGCTCGGAAATCTATAATTGAGAAAAGGAAGGAAGAGCAGGAACGACAACTTCTTGAAATGGAACGCGAGGAGGAATCACGAAGGTTAAAATTACAGAAGATAACAGAAGAGGCTGAGCAGAAGCGGCTTGCTGCAGAATATGAACAAAGAAAAAACCAACGGCTTCGTAGGGAAATGGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAGGCTGAAAAGCGTGTCGGTAAAAAGAAGGGAAGCAGGAAGCCGGTTCTCGACTCTGAAAAGTTGACGAAACAAACTTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAAAAGAAGTTACAAAAGCTAGCTAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGGTTGCTTGAAGAGAGAATGATTCATGAACGTGATCAACAGCTGGAGGTAGAGTTAAGCAAGCAACGCCATGAAGGTGACCTCAAGGAAAAGAATCGATTGTCCAGAATGATGGAGAGTAAGAAAAGTTTCCAAGAAAGAGTAATTAGTCTTCGTCAAGAGGAATTCAGCAAACGTAGAGCTGAGAGAGAAGAGCATATCAGGCAAATAATTCAGGCCCGGAAAGCTGAAAGGGAGGCTCAGAGAAAGAAAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCGGAGAGGAGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATAGCTGAGAAGCAGAGACAGAGGGAGCGAGAGTTGGAAGAAAAAGAAAGACTGAGGAAAGAAAGTCTCTTTGGTAGTGCCAGATCAGGTGATGCTCCTGCTCGACCTGATGTTGCTCCTAGTTCTCGGCCTCTGGAGCCTGGGACTGCTGCTCCTGCCGCCGCTGCAGCTGCAGCTGCTGCAACATCCCCAGCGAAATACGTGCCAAAGTTTCGACGGACTGAAGGCTCCAACCCTGATGCACCACCATCTGAATCTGGTCGATGGGGAGGCAGCCGGCCTGATAATCGACCATCTCGACCGGACAGTTGGCGTAATGATGACAGCAGATCTGGGTTTGGAAGTTCAAGGCCATCATGGTCCTCATCCAGAGCTCCTGCTCGTGCTAGCACCGATCGCTGA 2913 43.32 MASFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARTQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLDILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVLLAALAVYPYDSKHGASHLELEHEKERNLRMANLIGFSLDSKLESRDVLSRENLFSELVSKGVLSCATQEVKDLYHLLEHEFFHLDLSTKLQPLLNKVSKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYHTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIGMKVDHSRNIVLFGNLGIESDGLRDHLTVFAESLNKARAMIYPPVLKASKTGDILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLQKITEEAEQKRLAAEYEQRKNQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERDQQLEVELSKQRHEGDLKEKNRLSRMMESKKSFQERVISLRQEEFSKRRAEREEHIRQIIQARKAEREAQRKKIFYVRREEERIRILREEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGSARSGDAPARPDVAPSSRPLEPGTAAPAAAAAAAAATSPAKYVPKFRRTEGSNPDAPPSESGRWGGSRPDNRPSRPDSWRNDDSRSGFGSSRPSWSSSRAPARASTDR* 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4636667 4644322 - Chy12G209950.1 Chy12g00395 238176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00395 970 MobiDBLite consensus disorder prediction 814 861 - -
Chy12g00395 970 Pfam PCI domain 373 509 IPR000717 -
Chy12g00395 970 Coils Coil 669 699 - -
Chy12g00395 970 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 970 IPR027512 GO:0005852
Chy12g00395 970 Gene3D UVR domain 217 268 - -
Chy12g00395 970 Coils Coil 603 649 - -
Chy12g00395 970 SMART PINT_4 441 532 IPR000717 -
Chy12g00395 970 Coils Coil 799 858 - -
Chy12g00395 970 MobiDBLite consensus disorder prediction 945 970 - -
Chy12g00395 970 MobiDBLite consensus disorder prediction 814 970 - -
Chy12g00395 970 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 913 IPR027512 GO:0005852
Chy12g00395 970 Gene3D - 269 343 - -
Chy12g00395 970 Gene3D - 363 493 - -
Chy12g00395 970 Coils Coil 774 794 - -
Chy12g00395 970 Coils Coil 561 595 - -
Chy12g00395 970 Coils Coil 93 120 - -
Chy12g00395 970 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Chy12g00395 970 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Chy12g00395 970 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 913 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00393 Chy-Chr12:4622834 Chy12g00395 Chy-Chr12:4636667 3.02E-120 proximal
Chy12g00394 Chy-Chr12:4624348 Chy12g00395 Chy-Chr12:4636667 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00395 K03254 - csv:101209344 1618.98