Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00450 ATGGACAATAACAATTATCAGCAAGCTGGTGATTTGACTGATGTGATCCGACTGAGTTCCGCCCCTGTCACCGGTCATTTCTCCTCCGAATTCTCTCTCGACCCGTTTTCCGGTGAGAGACAACTCTGGTCGCACCTTCCTGCTGACAATTCTTCCATGAATTTTGGAGATCCGTTGTCGTTTCCAACTCGAGATCCATTTCTTCTTCCCCATTTTTCTCCCTTCAACTTTGCTTCGGATGGCGGCGGTGAGGGTTTGGCGGCGGACGACCAGCCGTCTAATTTACTTTCGCATATGTTGCAGATCTCTCCGAGTTCTGGTGATGGTGTAATTAGTACTCCTCCATGTGAGTCGCTCGCCACAGCAGTGGGGAATTCTCCGAGGTCGACTTCGGTTCGTGGTGGCGGTGGTCTTGTGGTTCCGACCAGTGGCTCGAACTCTCTTTGTTTAATGGAGAATTCCGGGATTCAGATCTCTTCTCCGCGAAATTCCGCCAATAAAAGAAGGAAGAGCCAAGTGAAGAAGGTGGTGTGTATTCCGGCACCGGCACCGGCGAACAGTCGATCAAGCAGCGGCGAAGTGGTTCCTTCTGATCTATGGGCATGGAGGAAGTACGGACAAAAGCCCATCAAAGGATCCCCATATCCAAGGGGATATTATAGGTGCAGTAGTTCCAAGGGCTGCTCCGCTCGGAAGCAGGTCGAGCGAAGTCGTACCAACCCCAACATGCTTGTCATCACCTACACTTCGGAGCACAACCACCCATGGCCCACTCAACGCAATGCCCTTGCAGGTTCTACTCGTTCCCATCCTTCACGAACCACCACCGCTACCACCGCTAATAAAACAAGCCCGAAACACGAGCACATTAACGACATCCTGCCAACCACAACAATAAAGGAGGAAGAGATGGATGAAGACCAAACGACAGATAAAGCAACAACAACAAATGATAATCAGGAGGAAGGAGATCATCAAGATTTCCCTTATGACTTAATTTTCACTGAATTTTCAGATCAAATGAACGACCTTGAGCACGACAACAACCACGACCATAATCATCATCTTTCAGCAGACCCTCTGAACAACAATTTGTTGATGTTTAGTAACCATGGATTTAGTGCAGGAAATGGAGAAGGCAGTAAAGATCCATTTTTGGAGCTCTATGATTGGGCAGAGAATTCAAGTGGAAGTTTGTTCAAAGAAGCCAAGGGAGGTTGA 1221 48.4 MDNNNYQQAGDLTDVIRLSSAPVTGHFSSEFSLDPFSGERQLWSHLPADNSSMNFGDPLSFPTRDPFLLPHFSPFNFASDGGGEGLAADDQPSNLLSHMLQISPSSGDGVISTPPCESLATAVGNSPRSTSVRGGGGLVVPTSGSNSLCLMENSGIQISSPRNSANKRRKSQVKKVVCIPAPAPANSRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTNPNMLVITYTSEHNHPWPTQRNALAGSTRSHPSRTTTATTANKTSPKHEHINDILPTTTIKEEEMDEDQTTDKATTTNDNQEEGDHQDFPYDLIFTEFSDQMNDLEHDNNHDHNHHLSADPLNNNLLMFSNHGFSAGNGEGSKDPFLELYDWAENSSGSLFKEAKGG* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5585747 5589044 + Chy12G210500.1 Chy12g00450 238231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00450 406 SUPERFAMILY WRKY DNA-binding domain 194 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy12g00450 406 Pfam WRKY DNA -binding domain 198 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy12g00450 406 ProSiteProfiles WRKY domain profile. 191 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy12g00450 406 MobiDBLite consensus disorder prediction 253 284 - -
Chy12g00450 406 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 91 394 - -
Chy12g00450 406 SMART WRKY_cls 196 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy12g00450 406 Gene3D WRKY domain 169 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy12g00450 406 MobiDBLite consensus disorder prediction 285 326 - -
Chy12g00450 406 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 91 394 IPR044810 GO:0003700
Chy12g00450 406 MobiDBLite consensus disorder prediction 253 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00062 Chy-Chr2:462320 Chy12g00450 Chy-Chr12:5585747 1.91E-64 dispersed
Chy07g01200 Chy-Chr7:16850218 Chy12g00450 Chy-Chr12:5585747 6.35E-37 dispersed
Chy09g01393 Chy-Chr9:15662956 Chy12g00450 Chy-Chr12:5585747 4.08E-29 dispersed
Chy11g00548 Chy-Chr11:6055556 Chy12g00450 Chy-Chr12:5585747 1.62E-29 dispersed
Chy12g00064 Chy-Chr12:562489 Chy12g00450 Chy-Chr12:5585747 1.19E-33 dispersed
Chy12g00450 Chy-Chr12:5585747 Chy06g00146 Chy-Chr6:929471 1.45E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18836 PF03106 WRKY 4.10E-25 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00450 - - csv:101220733 783.482