Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00474 ATGTTTGATATTAATAGTCTTTGGGGAGTGGAGCTGCCAATTCACCAACGAGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCAAATGCTCGAGTACGCGACCCGGTGTATGGGTGTGTTGGAGCAATATCGTCTCTACAGCATCAAATAGACGCCCTCCAAACTCAACTGGCTTTAGCTCAAGCCGAAGTGGTGCACCTCAGGGTGCGTCAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCTAGGACCATGTTTGAGATGGATATGGTTGTAGACCAAGCCATGGAGGAATCAATGTGGTGA 360 48.61 MFDINSLWGVELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW* 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6034872 6049589 + Chy12G210740.1 Chy12g00474 238255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00474 119 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 11 111 - -
Chy12g00474 119 MobiDBLite consensus disorder prediction 76 99 - -
Chy12g00474 119 Pfam Lateral organ boundaries (LOB) domain 11 61 IPR004883 -
Chy12g00474 119 ProSiteProfiles LOB domain profile. 1 64 IPR004883 -
Chy12g00474 119 Coils Coil 43 70 - -
Chy12g00474 119 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00374 Chy-Chr10:9154704 Chy12g00474 Chy-Chr12:6034872 1.04E-25 dispersed
Chy11g01380 Chy-Chr11:20110376 Chy12g00474 Chy-Chr12:6034872 1.51E-20 dispersed
Chy12g00474 Chy-Chr12:6034872 Chy12g00861 Chy-Chr12:13837624 9.34E-23 dispersed
Chy12g00474 Chy-Chr12:6034872 Chy11g01024 Chy-Chr11:14506810 2.95E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18838 PF03195 LOB 4.20E-15 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00474 - - csv:101202930 181.03