Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00483 ATGGCAACTACTTGTGATGCTTGTGGTTACCGTAGTTCTGAGCTGAAGCCTGGTGGGCGAATCCCTGAAAAAGGAAAGATAATTAGTCTATGTGTGAAGAATGTTAGAGATCTCAGTCGAGATGTAATAAAGTCAGATACTGCAAGCGTAAAAGTCCCAGATCTTGAGTTGGAGCTGACTAGTGGTACTCTTGGGGGAATTGTTACAACTGTTGAAGGCTTAATCACAAAGATAAGTGAAAGTCTTGAGAGAGTACATGGATTTACTTTTGGAGACAGTCTTGATGAAAATAAAAGAAACAAGTGGTTGGACTTCAAAACAAGACTAACCAAGCTCTTGAGTTTGGAGCAGCCTTGGACTCTAATCCTTGATGATGCCTTAGCAAATTCGTTTATTGCACCAGTGACTGATGATATGAAAGATGACCATCAGTTAACATTCGAGGAGTACGAGCGATCGTGGGAACAGAACGAGGAACTCGGTTTGAACGACATGGACACCTCAGCTGCTGATGCTGCTTATGAGTGA 528 42.23 MATTCDACGYRSSELKPGGRIPEKGKIISLCVKNVRDLSRDVIKSDTASVKVPDLELELTSGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDENKRNKWLDFKTRLTKLLSLEQPWTLILDDALANSFIAPVTDDMKDDHQLTFEEYERSWEQNEELGLNDMDTSAADAAYE* 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6291117 6303626 - Chy12G210830.1 Chy12g00483 238264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00483 175 SMART zpr1 1 134 IPR004457 GO:0008270
Chy12g00483 175 Pfam ZPR1 zinc-finger domain 1 132 IPR004457 GO:0008270
Chy12g00483 175 Gene3D ZPR1, A/B domain 20 162 IPR042451 -
Chy12g00483 175 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 1 174 - -
Chy12g00483 175 PANTHER ZINC FINGER PROTEIN ZPR1 1 174 IPR040141 -
Chy12g00483 175 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 1 166 IPR004457 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00483 Chy-Chr12:6291117 Chy12g00484 Chy-Chr12:6305060 3.84E-16 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00483 K06874 - csv:101208000 345.51