Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00489 ATGGCATCCTTCACTAAACCCATCTCAATCTTCTTGTTTCTCATCTGTTTTTTCTCAATCCAAGCTGTTTCACAATCTGATGAATGTGAAACCACAGCCAATTCATGTACAAACAAAGACAAAGCTTTACGTCTTAAAATCATTGCCATTTTCTCGATCCTCATTGCGAGTGTCATCGGTGTTGGCTCGCCACTCGTCACCCGATCGATCCCAATGTTGCACCCTGATAGAAACATGTTTGTCATTCTCAAAGCTTTCGCAGCAGGTATCATTCTCGCCACCGGTTTCATGCATGTTTTGCCTGACTCTTTCGATATGCTTTGGTCGAATTGTCTCAAGGAGAATCCATGGCATAAGTTTCCCTTTTCGGGTTTCGTTGCTATGATGTCTGCCATCGTCACCCTCATGGTGGATTCTGTGGCTACTAGTTTGTATACCAAGAAACATAACGAAGTTATGCCCGAGAATTCTCCGAGAGGAGGAGATGATCATGAGTTACCTGTAGTAAGTGGTGGTCATTTCCATGGCCACCATCATATGGACACCAAAGAAACTAATGCTGGTTCTCAACTCTTGCGTTATCGTGTTGTTGCCATGGTTTTGGAATTGGGAATTGTTGTCCATTCAGTTGTGATTGGACTTTCACTAGGAGCAACAAATGATACTTGCACAATCAAAGGTCTAGTGGCTGCTCTTTGTTTCCATCAAATGTTTGAAGGGATGGGTCTCGGTGGCTGTATTCTTCAGGCAGAATACAAGTGGATGAAGAAAGCAATAATGGTATTCTTTTTCTCAGTGACAACCCCATTTGGGATAGCACTTGGAATAGGTTTATCAAAAACCTATAAAGAAAATAGCCCTATTGCACTCATAACTGTGGGATTGCTAAATGCTTCTTCAGCTGGCCTTCTCATTTACATGGCTTTAGTGGATCTTCTTTCTGCTGATTTTATGGGCCCTAAATTACAAGGCAGCATCAAACTTCAAGTCAAATCCTATATTGCTGTTCTCTTAGGAGCTGGTGCTATGTCTTTAATGGCAAAGTGGGCTTGA 1053 42.17 MASFTKPISIFLFLICFFSIQAVSQSDECETTANSCTNKDKALRLKIIAIFSILIASVIGVGSPLVTRSIPMLHPDRNMFVILKAFAAGIILATGFMHVLPDSFDMLWSNCLKENPWHKFPFSGFVAMMSAIVTLMVDSVATSLYTKKHNEVMPENSPRGGDDHELPVVSGGHFHGHHHMDTKETNAGSQLLRYRVVAMVLELGIVVHSVVIGLSLGATNDTCTIKGLVAALCFHQMFEGMGLGGCILQAEYKWMKKAIMVFFFSVTTPFGIALGIGLSKTYKENSPIALITVGLLNASSAGLLIYMALVDLLSADFMGPKLQGSIKLQVKSYIAVLLGAGAMSLMAKWA* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6457471 6459927 + Chy12G210890.1 Chy12g00489 238270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00489 350 TIGRFAM zip: ZIP zinc/iron transport family 32 350 IPR004698 GO:0005385|GO:0016021|GO:0071577
Chy12g00489 350 Pfam ZIP Zinc transporter 44 347 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Chy12g00489 350 PANTHER ZINC TRANSPORTER 10-RELATED 11 350 - -
Chy12g00489 350 PANTHER ZINC/IRON TRANSPORTER 11 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01166 Chy-Chr1:13563646 Chy12g00489 Chy-Chr12:6457471 6.53E-12 dispersed
Chy02g00286 Chy-Chr2:1859143 Chy12g00489 Chy-Chr12:6457471 2.45E-119 dispersed
Chy07g00503 Chy-Chr7:4003300 Chy12g00489 Chy-Chr12:6457471 1.09E-106 dispersed
Chy11g01366 Chy-Chr11:19994378 Chy12g00489 Chy-Chr12:6457471 4.62E-77 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00489 K14709 - csv:101221552 674.47