Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00528 ATGGCTTTCCGGGCCTTTTTCTTGCTGTTTTTCTTCTTCATCTTTGGTTCTATTCCATTTGTTCGTGCTCTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATGTACACCTCATTGGACAGTCCTCCTCAGCTCACTGGTTGGATTGTTAGTGGAGGCGATCCATGTGCAGAATCATGGAAAGGGGTGACTTGTGAAGGGTCTGCCGTTGTCTCCATTGAGATTTCTGGGTTAGGGCTGAATGGAACGATGGGTTATGCGCTTTCGAGTTTTTTGTCACTGAAAAAGCTTGATATGAGCGACAACAATATTCATGACGCGATTCCTTACCAATTGCCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAGCTTAATTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGTGATAGGAGATGTTTTCACCAATCTTACTACCCTCGGAACCTTGGACCTTTCTTTCAACAATTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTGTCTAATGTTTCTTCCCTGTTTTTGCAGAACAACCGATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCCCAAGAACTGAAGTCGGTTGAAAGTTTCATTTATGATGGAAATTCATTTGACAATAGTCCTGCACCTCCTCCACCGCCTTTTACCCCACCTCCTCCTGGTAGATCTCGTAACAGCCCCAAACATCCTGGGTCTAGCGGTGGCACCCATACTGCACCAAGTTCTGAGGGCAGCTTATCCCACTCGAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAGTTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCTTCCAGAAGAGAAAACGAAAGAACATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCTATTGGCACTAGCGTGAATGCTGAGGTGCAAGAGCATCGTGTAAAAAGCGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGATTACAAGCAAAGAATGGATCAGTCAAAAGAATAAAAGCCCCTATTACTGCTACTTCTTACACTGTTGCTTCGCTTCAAACTGCAACAAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCACTTGGCCGTGTTTACAAAGCTGAGTTTCCTAACGGAAAGACAATGGCGATTAAGAAAATCGATAATTCAGCGCTGTCACTTCAGGAAGAAGACAATTTTCTTGAAGCGGTTTCGAATATGTCAAGATTGAGGCATACAAACATTGTCACACTGAACGGTTATTGTGCAGAGCATGGTCAGCGTCTTCTAGTTTACGAGTTCATTGGACATGGAAGTTTACATGACATGCTCCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAACATATTGCTTGATGAAGATCTCAACCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCAGATGGTTGGTTCATTTGGTTATAGTGCTCCAGAATTCGCCTTGTCAGGAATATACACCGTCAAGAGTGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCACTTGACAGTTCCAGAGTGAGATCAGAGCAGTCACTCGTTAGATGGGCGACCCCTCAACTTCATGATATTGATGCCTTAGCAAAAATGGTAGATCCTACTTTGAATGGAATGTACCCTGCGAAATCTCTGTCACGCTTTGCGGACATCATTGCTCTCTGTGTTCAGCCCGAGCCTGAGTTTCGACCTCCCATGTCTGAAGTAGTACAAGCATTGGTGCGTCTAGTGCAAAGAGCCAGTGTGGTAAAAAGGCATTCGAGTGATGAGTCGGGATTCAGCTACAAAACACCCGAGCATGATGCAGTTGAGTTGCCATTTTGA 2136 44.01 MAFRAFFLLFFFFIFGSIPFVRALTDASDVQALQVMYTSLDSPPQLTGWIVSGGDPCAESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLKKLDMSDNNIHDAIPYQLPPNLTSLNMAKNSLIGNLPYSFSTMASLNYLNMSHNLLSQVIGDVFTNLTTLGTLDLSFNNFTGDLPKSLGTLSNVSSLFLQNNRLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVESFIYDGNSFDNSPAPPPPPFTPPPPGRSRNSPKHPGSSGGTHTAPSSEGSLSHSNKGLPVLAIVGIVLGAIIFVLIVLVAFAVCFQKRKRKNIGLRASSGRLSIGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKAPITATSYTVASLQTATNSFSQECIVGEGSLGRVYKAEFPNGKTMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGHGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPEHDAVELPF* 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7317261 7322369 + Chy12G211280.1 Chy12g00528 238309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00528 711 Pfam Protein tyrosine and serine/threonine kinase 408 677 IPR001245 GO:0004672|GO:0006468
Chy12g00528 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Chy12g00528 711 SUPERFAMILY Protein kinase-like (PK-like) 384 677 IPR011009 -
Chy12g00528 711 SUPERFAMILY L domain-like 25 231 - -
Chy12g00528 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00528 711 MobiDBLite consensus disorder prediction 264 284 - -
Chy12g00528 711 MobiDBLite consensus disorder prediction 241 284 - -
Chy12g00528 711 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Chy12g00528 711 CDD STKc_IRAK 409 680 - -
Chy12g00528 711 Gene3D Transferase(Phosphotransferase) domain 1 482 704 - -
Chy12g00528 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 702 - -
Chy12g00528 711 Gene3D Ribonuclease Inhibitor 25 253 IPR032675 -
Chy12g00528 711 MobiDBLite consensus disorder prediction 244 263 - -
Chy12g00528 711 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8-LIKE ISOFORM X1 10 702 - -
Chy12g00528 711 Gene3D Phosphorylase Kinase; domain 1 364 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00528 - - - csv:101216091 1341.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00324 Chy-Chr2:2101640 Chy12g00528 Chy-Chr12:7317261 9.15E-180 dispersed
Chy03g00317 Chy-Chr3:3599734 Chy12g00528 Chy-Chr12:7317261 0 dispersed
Chy04g01763 Chy-Chr4:23994227 Chy12g00528 Chy-Chr12:7317261 2.02E-123 dispersed
Chy04g01764 Chy-Chr4:24002657 Chy12g00528 Chy-Chr12:7317261 2.98E-180 dispersed
Chy12g00528 Chy-Chr12:7317261 Chy04g02100 Chy-Chr4:26381217 6.74E-88 dispersed
Chy12g00528 Chy-Chr12:7317261 Chy04g00715 Chy-Chr4:8714168 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g00369 . 31 788 Strubbelig Receptor Gene Family AT4G03390 62.9 2.2e-210 729.2
Chy02g00324 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.2 8.2e-157 551.2
Chy04g01764 . 9 741 Strubbelig Receptor Gene Family AT5G06820 53.1 1.2e-181 633.6
Chy03g00317 . 22 697 Strubbelig Receptor Gene Family AT1G78980 61.5 1.4e-195 679.9
Chy04g00715 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Chy01g02121 . 24 692 Strubbelig Receptor Gene Family AT1G78980 50.5 9.8e-125 444.5
Chy03g00317 . 20 674 Strubbelig Receptor Gene Family AT3G13065 52.2 4.1e-144 508.8
Chy12g00528 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.3e-84 311.2
Chy04g01764 . 9 741 Strubbelig Receptor Gene Family AT5G06820 53.1 1.2e-181 633.6
Chy01g00369 . 31 788 Strubbelig Receptor Gene Family AT4G03390 62.9 2.2e-210 729.2
Chy02g00324 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.2 8.2e-157 551.2
Chy03g00317 . 20 674 Strubbelig Receptor Gene Family AT3G13065 52.2 4.1e-144 508.8
Chy03g00317 . 22 697 Strubbelig Receptor Gene Family AT1G78980 61.5 1.4e-195 679.9
Chy04g00715 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Chy01g02121 . 24 692 Strubbelig Receptor Gene Family AT1G78980 50.5 9.8e-125 444.5
Chy04g00715 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.8 8.0e-215 743.8
Chy01g02121 . 8 714 Strubbelig Receptor Gene Family AT1G53730 60.1 3.3e-184 642.1
Chy12g00528 . 5 689 Strubbelig Receptor Gene Family AT1G53730 51.6 1.4e-158 557.0
Chy03g00317 . 15 682 Strubbelig Receptor Gene Family AT1G53730 51.8 1.2e-157 553.9
Chy04g00715 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 7.2e-189 657.5
Chy01g02121 . 6 704 Strubbelig Receptor Gene Family AT3G14350 55.1 4.9e-169 591.7
Chy12g00528 . 138 712 Strubbelig Receptor Gene Family AT4G22130 60.3 1.1e-179 626.7
Chy04g00715 . 398 726 Strubbelig Receptor Gene Family AT4G22130 63.4 5.3e-121 431.8
Chy01g02121 . 391 706 Strubbelig Receptor Gene Family AT4G22130 64.2 5.1e-116 415.2
Chy01g00369 . 456 780 Strubbelig Receptor Gene Family AT4G22130 57.7 4.3e-107 385.6
Chy03g00317 . 386 696 Strubbelig Receptor Gene Family AT4G22130 56.9 2.2e-98 356.7
Chy02g00324 . 464 752 Strubbelig Receptor Gene Family AT4G22130 60.1 2.8e-98 356.3
Chy04g01764 . 393 715 Strubbelig Receptor Gene Family AT4G22130 50.5 2.9e-87 319.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004508 2 2 2 1 0 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 1 1 0 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71610 PF00069 Pkinase 3.60E-44 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g00528 Chy_Chr12 FPKM 2.901192 3.062013 0.0 0.0 10.652708 10.318341 10.877251 0.0 0.0 0.0