Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00563 ATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACACTCAAGAAAAGGAAAAAGGGTTTACTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGCATTGAGGCATGTGCTATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACTCTAGGCCTCCAAAAGGTTCTCTCTAAATTCAAAAGCCTACCAGAGATGGAGCAATGTAAGAAGATGGTCAACCAAGAGACCTTCCTTCGTGATCGTATCGCAAAGGCTGCCGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGACTCATGTTTCAAAGCCTCGTAGCTGGAGCAACTCCGCCGCTAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGTTGGTTGATCAAAAGATGGCTGATATTAGTAAGAGAATGGAGTTGCTTACAGTAAATCGATCGTCACGTGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGCTAATGATGAAGATCATGTGGGATTCAATATTGGGGATGATGTGATTCAACTTCCTAGCTTTGGGGAGGATGATAATCATGGTGTGCTTATTGAAAAGTTTTAA 645 43.41 MTRKKVKLAYITNDASRKATLKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQSLVAGATPPLDLNVIDLNDLGWLVDQKMADISKRMELLTVNRSSRVATNEPSWFMEMVNQGANDEDHVGFNIGDDVIQLPSFGEDDNHGVLIEKF* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7896634 7897792 - Chy12G211630.1 Chy12g00563 238344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00563 214 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Chy12g00563 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy12g00563 214 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Chy12g00563 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy12g00563 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy12g00563 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy12g00563 214 Coils Coil 18 38 - -
Chy12g00563 214 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Chy12g00563 214 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Chy12g00563 214 Coils Coil 87 114 - -
Chy12g00563 214 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 162 - -
Chy12g00563 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Chy12g00563 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00563 - - - csv:101219796 392.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g01097 Chy-Chr8:18112967 Chy12g00563 Chy-Chr12:7896634 1.57E-73 dispersed
Chy12g00563 Chy-Chr12:7896634 Chy11g00034 Chy-Chr11:402805 5.20E-11 dispersed
Chy12g00563 Chy-Chr12:7896634 Chy01g00215 Chy-Chr1:1451095 7.70E-10 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18841 PF00319 SRF-TF 4.20E-16 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g00563 Chy_Chr12 FPKM 0.776423 0.801574 0.0 0.0 0.0 0.213891 0.0 0.283526 0.0 0.259182