Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00563 ATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACACTCAAGAAAAGGAAAAAGGGTTTACTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGCATTGAGGCATGTGCTATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACTCTAGGCCTCCAAAAGGTTCTCTCTAAATTCAAAAGCCTACCAGAGATGGAGCAATGTAAGAAGATGGTCAACCAAGAGACCTTCCTTCGTGATCGTATCGCAAAGGCTGCCGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGACTCATGTTTCAAAGCCTCGTAGCTGGAGCAACTCCGCCGCTAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGTTGGTTGATCAAAAGATGGCTGATATTAGTAAGAGAATGGAGTTGCTTACAGTAAATCGATCGTCACGTGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGCTAATGATGAAGATCATGTGGGATTCAATATTGGGGATGATGTGATTCAACTTCCTAGCTTTGGGGAGGATGATAATCATGGTGTGCTTATTGAAAAGTTTTAA 645 43.41 MTRKKVKLAYITNDASRKATLKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQSLVAGATPPLDLNVIDLNDLGWLVDQKMADISKRMELLTVNRSSRVATNEPSWFMEMVNQGANDEDHVGFNIGDDVIQLPSFGEDDNHGVLIEKF* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7896634 7897792 - Chy12G211630.1 Chy12g00563 238344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00563 214 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Chy12g00563 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy12g00563 214 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Chy12g00563 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy12g00563 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy12g00563 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy12g00563 214 Coils Coil 18 38 - -
Chy12g00563 214 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Chy12g00563 214 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Chy12g00563 214 Coils Coil 87 114 - -
Chy12g00563 214 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 162 - -
Chy12g00563 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Chy12g00563 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g01097 Chy-Chr8:18112967 Chy12g00563 Chy-Chr12:7896634 1.57E-73 dispersed
Chy12g00563 Chy-Chr12:7896634 Chy11g00034 Chy-Chr11:402805 5.20E-11 dispersed
Chy12g00563 Chy-Chr12:7896634 Chy01g00215 Chy-Chr1:1451095 7.70E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18841 PF00319 SRF-TF 4.20E-16 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00563 - - csv:101219796 392.504