Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00604 ATGGCTGCTGCTGGTGATTTCTTGCCCCCTTTGGTTATGCTGGTTGTCCAATTCCTATATGCAGGTTTGAATATTACATCAAAGTTAGCCATGGAGTTTGGAATGAATCCATTGGTTCTAGTTGCTTACAGGCAGATGTTTGCTACCATAGCCATAGCTCCTTGTGCTTACTGGTTTGAGAGAAAAGGGAGACCCAAGATTACAAAGCCTATCCTGTTTCAGATTCTGCTCTGTTCCTTAACTGGGGCAACAGCAAACCAAGTCTTTTACTACGTAGGGTTAAAATATTCAACCCCGACTATCGCATGCGCATTGACCAATGTTCTGCCTGCTGCAACTTTTGTCCTTGCTGTTCTTTTCAGACAAGAATCTGTGGGGATCAAAACAAGTCCAGGTGCAGCTAAGGTGATCGGAACTGTTGTGTGTGTCGGAGGGGCGATGTTGCTGTCTTTTTACCGTGGGCAAACCATTGAGCTTGGTGAATCTGGGATACATTGGAAGTATGCCGAGTTAATGAGGGGGGAAAGTTCAAGCAACCAAGGCAGCAGCATCTGGGGCTCCCTCTGCTTGATCATAAGCTCTGTTGCTTGGGCGGCTTGGTTTGTTATCCAAGCAAGAGTGAATGAGAAGTTTCCAGCTCCCTACACGAGCACCGCTCTCATGACTTTCATGGCAACCATTCAGTGTGGAGCAATTGCCGTTGGAGTTGAGCATAAGACTCTTGCAGCTTGGTCATTGAAAAGTTCAATCAGGCTTGTCGGCGCTCTCTATGCGGGAGTGGCATGCTCTGGGATAGCATTTTGCTTAACCTCATGGAGTATCCAAAAGAGAGGTCCTCTCTATGCTTCAGTTTTCAGCCCCTTCTTGCTCGTTATTGTGGCTATTTTCAGCTGGGCCTTTTTTCAAGAAAAATTATACGTCGGCACTGTTGTAGGGTCATTGTTGATTGTTGTTGGGCTATATTCTGTCCTATGGGGAAAGACCAAAGAAGTGAAACTACAACAACATATTGAAATGACGGCGGCAGCAGAGGCAAAGCTAGATGACTATAATAACAAAGAAGACTTGGAAGAACAGTCCTCTGTGGTTTCAAATGCCAATATTCTCCACAATCTAGGAGTTGTGCACTATTGTACTGCTTGCATGGCTATAGAGTTGGCACTGCAACCAACATTTAAAGAAACTGGAGTATTGGTCAAAATAGAAGCAATTATACCGGATGGAGACAACTTGGGGAGAAATAAACAAGAGAGTGCATTACTTGCAATTGGCGTGATGAGAACACCAGTCGGGCTCCAATATGTTAGCCAGTTTAACGGTTCTGTAATGGACTATGGGGTGGTGGGTTCACAAAATTTGATTCAACTTGATGATTCTCTGGACAAATATTAG 1392 44.61 MAAAGDFLPPLVMLVVQFLYAGLNITSKLAMEFGMNPLVLVAYRQMFATIAIAPCAYWFERKGRPKITKPILFQILLCSLTGATANQVFYYVGLKYSTPTIACALTNVLPAATFVLAVLFRQESVGIKTSPGAAKVIGTVVCVGGAMLLSFYRGQTIELGESGIHWKYAELMRGESSSNQGSSIWGSLCLIISSVAWAAWFVIQARVNEKFPAPYTSTALMTFMATIQCGAIAVGVEHKTLAAWSLKSSIRLVGALYAGVACSGIAFCLTSWSIQKRGPLYASVFSPFLLVIVAIFSWAFFQEKLYVGTVVGSLLIVVGLYSVLWGKTKEVKLQQHIEMTAAAEAKLDDYNNKEDLEEQSSVVSNANILHNLGVVHYCTACMAIELALQPTFKETGVLVKIEAIIPDGDNLGRNKQESALLAIGVMRTPVGLQYVSQFNGSVMDYGVVGSQNLIQLDDSLDKY* 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8577060 8580761 - Chy12G212040.1 Chy12g00604 238385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00604 463 PANTHER WAT1-RELATED PROTEIN 9 351 IPR030184 GO:0016021|GO:0022857
Chy12g00604 463 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 153 - -
Chy12g00604 463 Pfam EamA-like transporter family 11 150 IPR000620 GO:0016020|GO:0016021
Chy12g00604 463 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020|GO:0016021
Chy12g00604 463 Coils Coil 333 353 - -
Chy12g00604 463 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 328 - -
Chy12g00604 463 PANTHER WAT1-RELATED PROTEIN 9 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00595 Chy-Chr5:6956060 Chy12g00604 Chy-Chr12:8577060 7.75E-82 dispersed
Chy05g01017 Chy-Chr5:14813206 Chy12g00604 Chy-Chr12:8577060 2.01E-146 dispersed
Chy12g00604 Chy-Chr12:8577060 Chy04g01678 Chy-Chr4:23148707 2.82E-83 dispersed
Chy12g00604 Chy-Chr12:8577060 Chy09g00760 Chy-Chr9:10057546 1.80E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00604 - - csv:101215353 721.079