Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00620 ATGGCCTCAAAGTCGAATTTGAGACCTTCTGCAAAGCAACCAACGGGGATTACCGGCGTTAAAGGGACTGATGTGAGTGTTCTAAAGTCCTTACCTTCACAGACTTCATTAGGAAACAAAATTGGTTCTGTTATCTCTGGAGATGTATTGAACTACACACAGAAATCCTTGAATCAGTCTACTTTGACTGATTCATCAAATAGCAAATCCTCAAGTTTAAATCATAAAGAGTCTACTGAGTCTTGTAATCAGAAAATTAAAGAAAATTCCTCAAAGTCTGACGCTAAGACAGAAGGTCTTAACGGGACTCATGGCTTAGCGGAGGACTCTATAGATTCCAAGAAGAAAATATCAGAATGTGGGAGTGGGAAGGATAGTTTAGTTTCTGCCAAAGTCAGTGATGGAACAAACAGTATTTCCAAGACGAGTGGAAGTGCAAAAATTAGTGACCGCGTTGAGATGGTTGAGAGTGGCAAGAGCAGCATGTGTCGTGGAAGCACAAGCAGCGACATCAGTGACGAAAGTACTTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTACGTGCAAGGGACGGGATATTGGGATTAGGTCATTTTAGACTATTGAAGAGACTGGGATGTGGGGATATTGGAAGCGTCTACCTGTCAGAGTTGAGTGGTACTAAATGTTATTTTGCTATGAAGGTCATGGACAAAGGGTCTCTAGCAAGTCGAAAGAAGTTGCTTCGAGCTCAGACTGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCTACATTATATACTCATTTTGAGACTGATAAATTTTCATGCTTAGTGATGGAGTTTTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGGCAGCCAGGGAAGCATTTTACCGAACAGGCAGTGAAATTTTATGTAGCAGAGGTCCTCTTAGCACTCGAGTATCTTCATATGCTTGGGATTGTATACCGGGACCTTAAGCCTGAGAATGTTCTTGTGAGGGAAGATGGACATATAATGCTTTCAGACTTCGATCTTTCACTAAGATGTGCAGTTAGTCCAACATTGGTGAAGGGCTCATGTTCCGAGTCTGAACCTTTGAGAAAGAATTCAACTTATTGTGTTCAACCGGCTTGTATTGAACCTTCCTGCATCCAGCCCTCCTGTGTAGTTCCCACGACATGCTTCACTCCCCGACTTTTCTCTAGCAAGTCGAAGAAGGATAGAAAACCCAAGACTGAAATAGGAAATCAGGTAACGCCTTTGCCAGAGCTCATTGCAGAGCCTACGGAGGCGAGGTCAATGTCATTTGTTGGTACACATGAATATTTGGCACCAGAGATCATTAAAGGCGAAGGTCATGGAAGTGCTGTTGACTGGTGGACTTTCGGAATCTTCCTATATGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCCACATTGTTCAACGTTGTTGGTCAGCCTTTGCGGTTTCCTGAATCACCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCTTACAAACGAGGGGCAACTGAGATCAAACAACATCCTTTCTTTGAAGGTGTTAACTGGGCACTGATACGTTGTGCTTCACCACCAGAAGTACCAAAGCCTGTCGAGATTGAGAGTATACCCTCACCAGCACCTCCAGTCAGTGGAAAAGCTATAATGGCTAGACCTGGTCCCGATTCCAAATCATCTGATAATTATCTGGAGTTTGATTTCTTTTAG 1824 43.42 MASKSNLRPSAKQPTGITGVKGTDVSVLKSLPSQTSLGNKIGSVISGDVLNYTQKSLNQSTLTDSSNSKSSSLNHKESTESCNQKIKENSSKSDAKTEGLNGTHGLAEDSIDSKKKISECGSGKDSLVSAKVSDGTNSISKTSGSAKISDRVEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFTEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNSTYCVQPACIEPSCIQPSCVVPTTCFTPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIESIPSPAPPVSGKAIMARPGPDSKSSDNYLEFDFF* 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8912134 8914428 + Chy12G212200.1 Chy12g00620 238401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00620 607 ProSiteProfiles Protein kinase domain profile. 213 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00620 607 SUPERFAMILY Protein kinase-like (PK-like) 189 577 IPR011009 -
Chy12g00620 607 MobiDBLite consensus disorder prediction 58 107 - -
Chy12g00620 607 MobiDBLite consensus disorder prediction 80 94 - -
Chy12g00620 607 Gene3D Phosphorylase Kinase; domain 1 212 296 - -
Chy12g00620 607 MobiDBLite consensus disorder prediction 1 20 - -
Chy12g00620 607 Pfam Protein kinase domain 447 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00620 607 Pfam Protein kinase domain 214 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00620 607 SMART serkin_6 213 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00620 607 MobiDBLite consensus disorder prediction 574 600 - -
Chy12g00620 607 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 4 607 - -
Chy12g00620 607 CDD STKc_phototropin_like 212 573 - -
Chy12g00620 607 PANTHER FLIPPASE KINASE 1-RELATED 4 607 - -
Chy12g00620 607 Gene3D Transferase(Phosphotransferase) domain 1 297 399 - -
Chy12g00620 607 Gene3D Transferase(Phosphotransferase) domain 1 444 568 - -
Chy12g00620 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Chy12g00620 607 MobiDBLite consensus disorder prediction 1 24 - -
Chy12g00620 607 MobiDBLite consensus disorder prediction 58 79 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00475 Chy-Chr2:2924268 Chy12g00620 Chy-Chr12:8912134 0 dispersed
Chy04g01423 Chy-Chr4:20858972 Chy12g00620 Chy-Chr12:8912134 0 dispersed
Chy05g01330 Chy-Chr5:17433069 Chy12g00620 Chy-Chr12:8912134 1.69E-144 dispersed
Chy06g00017 Chy-Chr6:112249 Chy12g00620 Chy-Chr12:8912134 5.96E-137 dispersed
Chy06g00018 Chy-Chr6:114943 Chy12g00620 Chy-Chr12:8912134 7.72E-88 dispersed
Chy08g00017 Chy-Chr8:560827 Chy12g00620 Chy-Chr12:8912134 0 dispersed
Chy11g00891 Chy-Chr11:12313870 Chy12g00620 Chy-Chr12:8912134 0 dispersed
Chy11g00892 Chy-Chr11:12325614 Chy12g00620 Chy-Chr12:8912134 2.90E-148 dispersed
Chy12g00368 Chy-Chr12:4176145 Chy12g00620 Chy-Chr12:8912134 1.75E-131 dispersed
Chy12g00620 Chy-Chr12:8912134 Chy08g00920 Chy-Chr8:16632692 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71611 PF00069 Pkinase 5.30E-37 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00620 K08286 - csv:101213662 1158.67