Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00628 ATGGACTCTGGTGATTTTGAGCAATCCTTGCTTCCTAAGCTATCTGATTCTGATAAGAAGAATTCTCTCCTGAGAAGGAAATCTAACCGACATGGTAGTTTTTCACATTCAGTAGAAAATAATAATCAACCACAAAATTATGATGTAGTGTCTCATCAACGTATTGCTGTTTCACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTGGCGACTTATTTGGGAGGAGGCACATTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGAAAGAAAACAAATGGGGTTGTCGATTCCATTTACTTTTGTGTTGTGACAATGACCACCGTTGGGTATGGTGATCTTGTTCCTGATAGCATGGTTGCAAAACTACTTGCATGTGTTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATTCTTAGCAAGGCAGCGGATTACATTGTTGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTGCATGAGGAAAAAGATCAGCTCCAGTGAGATCCTTCAGGAATCTGAGGCTAACAAATCGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGGCTCTTATCGTTGTTGGAACCCTTTTCTTGACTGTGGTTGAGAACCTAGAGTTCACAGATGCCTTTTATTGTGTTTGTTCCACAATCACTACTCTCGGCTATGGGGATCAGAGCTTCTCTACTACAGCCGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCGGTACCATCTGCTTAGCACAGTTTTTTCTGTACCTTGCAGAATTATACACAGAAAGGAGACAAGAATCACTGGTTAATTGGGTTCTCAGCCGAAGCCTCACATATTCGGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGTGCTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATACTTGACACTTTTAAGAAGCTTGACATTGATCAATCAGGATGTCTTACAGAAGCTGATATAGTAGTAATCTCATAG 1029 39.84 MDSGDFEQSLLPKLSDSDKKNSLLRRKSNRHGSFSHSVENNNQPQNYDVVSHQRIAVSQVSFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGVVDSIYFCVVTMTTVGYGDLVPDSMVAKLLACVYVFTGMTLGGMILSKAADYIVEKQEILLVKAMCMRKKISSSEILQESEANKSKYKFIMTGILLWALIVVGTLFLTVVENLEFTDAFYCVCSTITTLGYGDQSFSTTAGRVFAVIWIMSGTICLAQFFLYLAELYTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILDTFKKLDIDQSGCLTEADIVVIS* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8994580 8995753 + Chy12G212280.1 Chy12g00628 238409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00628 342 Gene3D - 57 158 - -
Chy12g00628 342 Pfam Ion channel 190 261 IPR013099 -
Chy12g00628 342 Pfam Ion channel 69 148 IPR013099 -
Chy12g00628 342 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 20 338 - -
Chy12g00628 342 SUPERFAMILY Voltage-gated potassium channels 177 276 - -
Chy12g00628 342 PRINTS Two pore domain K+ channel signature 221 230 IPR003280 GO:0005267|GO:0016020|GO:0071805
Chy12g00628 342 PRINTS Two pore domain K+ channel signature 104 132 IPR003280 GO:0005267|GO:0016020|GO:0071805
Chy12g00628 342 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Chy12g00628 342 SUPERFAMILY Voltage-gated potassium channels 58 163 - -
Chy12g00628 342 MobiDBLite consensus disorder prediction 1 22 - -
Chy12g00628 342 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 20 338 IPR003280 GO:0005267|GO:0016020|GO:0071805
Chy12g00628 342 Gene3D - 161 271 - -
Chy12g00628 342 SUPERFAMILY EF-hand 248 339 IPR011992 -
Chy12g00628 342 Gene3D - 282 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01154 Chy-Chr1:13481172 Chy12g00628 Chy-Chr12:8994580 6.68E-127 dispersed
Chy02g00171 Chy-Chr2:1206876 Chy12g00628 Chy-Chr12:8994580 1.74E-63 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00628 K05389 - csv:101214791 665.611