Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy12g00628 | ATGGACTCTGGTGATTTTGAGCAATCCTTGCTTCCTAAGCTATCTGATTCTGATAAGAAGAATTCTCTCCTGAGAAGGAAATCTAACCGACATGGTAGTTTTTCACATTCAGTAGAAAATAATAATCAACCACAAAATTATGATGTAGTGTCTCATCAACGTATTGCTGTTTCACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTGGCGACTTATTTGGGAGGAGGCACATTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGAAAGAAAACAAATGGGGTTGTCGATTCCATTTACTTTTGTGTTGTGACAATGACCACCGTTGGGTATGGTGATCTTGTTCCTGATAGCATGGTTGCAAAACTACTTGCATGTGTTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATTCTTAGCAAGGCAGCGGATTACATTGTTGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTGCATGAGGAAAAAGATCAGCTCCAGTGAGATCCTTCAGGAATCTGAGGCTAACAAATCGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGGCTCTTATCGTTGTTGGAACCCTTTTCTTGACTGTGGTTGAGAACCTAGAGTTCACAGATGCCTTTTATTGTGTTTGTTCCACAATCACTACTCTCGGCTATGGGGATCAGAGCTTCTCTACTACAGCCGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCGGTACCATCTGCTTAGCACAGTTTTTTCTGTACCTTGCAGAATTATACACAGAAAGGAGACAAGAATCACTGGTTAATTGGGTTCTCAGCCGAAGCCTCACATATTCGGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGTGCTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATACTTGACACTTTTAAGAAGCTTGACATTGATCAATCAGGATGTCTTACAGAAGCTGATATAGTAGTAATCTCATAG | 1029 | 39.84 | MDSGDFEQSLLPKLSDSDKKNSLLRRKSNRHGSFSHSVENNNQPQNYDVVSHQRIAVSQVSFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGVVDSIYFCVVTMTTVGYGDLVPDSMVAKLLACVYVFTGMTLGGMILSKAADYIVEKQEILLVKAMCMRKKISSSEILQESEANKSKYKFIMTGILLWALIVVGTLFLTVVENLEFTDAFYCVCSTITTLGYGDQSFSTTAGRVFAVIWIMSGTICLAQFFLYLAELYTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILDTFKKLDIDQSGCLTEADIVVIS* | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 8994580 | 8995753 | + | Chy12G212280.1 | Chy12g00628 | 238409 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy12g00628 | 342 | Gene3D | - | 57 | 158 | - | - | |
Chy12g00628 | 342 | Pfam | Ion channel | 190 | 261 | IPR013099 | - | |
Chy12g00628 | 342 | Pfam | Ion channel | 69 | 148 | IPR013099 | - | |
Chy12g00628 | 342 | PANTHER | OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN | 20 | 338 | - | - | |
Chy12g00628 | 342 | SUPERFAMILY | Voltage-gated potassium channels | 177 | 276 | - | - | |
Chy12g00628 | 342 | PRINTS | Two pore domain K+ channel signature | 221 | 230 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Chy12g00628 | 342 | PRINTS | Two pore domain K+ channel signature | 104 | 132 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Chy12g00628 | 342 | ProSitePatterns | EF-hand calcium-binding domain. | 326 | 338 | IPR018247 | - | |
Chy12g00628 | 342 | SUPERFAMILY | Voltage-gated potassium channels | 58 | 163 | - | - | |
Chy12g00628 | 342 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Chy12g00628 | 342 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 20 | 338 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Chy12g00628 | 342 | Gene3D | - | 161 | 271 | - | - | |
Chy12g00628 | 342 | SUPERFAMILY | EF-hand | 248 | 339 | IPR011992 | - | |
Chy12g00628 | 342 | Gene3D | - | 282 | 342 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g01154 | Chy-Chr1:13481172 | Chy12g00628 | Chy-Chr12:8994580 | 6.68E-127 | dispersed | |
Chy02g00171 | Chy-Chr2:1206876 | Chy12g00628 | Chy-Chr12:8994580 | 1.74E-63 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy12g00628 | K05389 | - | csv:101214791 | 665.611 |