Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00647 ATGAAGCATCGGAAGATGAAGATCTATAATTCCATTCTCATTTTATTTTCACTCCTTTTGATAATATCACCTGCCATGGCTGCCAAAAAGAATATAAATGGTTTTGCAGCAATTATGGATGAGGAAGAGGCAACCCAGCTTGCAAAAACTAAATTGGAAAATTATAAAAATGTGACAGAACACCCGGAAGTAGCAGCAGTATTGCCAAACAGAGCAAAAAAGTTACACACAACACATTCATGGGAGTTTATGCATTTGGAGAAGAATGGTGTAATTCCCCCTTCATCTGCTTGGCGTAGGGCTAAATCTGGAAAAGACGTCATTATCGCCAATCTTGACACTGGTGTGTGGCCGGGGTCCAAGAGTTTTGGAGAACATGGGATCGTTGGACCTGTTCCATCAAAGTGGAAAGGAGGTTGCACTGATAAAACCCCTGATAGAGTGCCATGTAACAGGAAACTAATAGGAGCAAAGTACTTCAACAAGGGCTTTCTCGCATACTTGAAGTCTGAGGATTTGACAGCATCGGTGATTAACTCCACTCGCGACTACGACGGTCATGGTTCACACACCTTGTCCACGGCTGGGGGCAGCTATGTGTCCGGCGCCAGTGCGTTCGGGTTAGGCGTTGGAACTGCCAAAGGGGGCTCTCCCAAGGCTCGTGTTGCTGCCTATAAGGTTTGCTGGCCACTTGAGGATGGAGGTTGTTTCGACGCTGACATTGCCGAGGCATTTGACCATGCCATTCACGACCGCGTTGATGTTCTTTCGCTCTCCCTTGGTGGCGAGCCAGCCGATTATTATGATGATGGAATCGCCATTGCAGCCTTCCATGCAATGAAGAAGGGAATCCCTGTGGTGTGCTCGGCTGGTAACTCTGGCCCTGGTGCTCAGACTGTTTCTAATACTGCACCTTGGATTTTGACTGTTGGTGCAAGTACTGTGGATCGTGAGTTTCAGGCTCCTGTTGAGCTCCAAAATGGTCACCGTTATATGGGTTCGAGCCTTTCAAAAGGATTAAAGGGAGACAAGCTTTATCAATTAATAACTGGAGCTGAAGCGAAAGCGAAGAACGCCACCGCGGAGGTGGCCATGCTTTGCAAACCAAAAACATTGGATCATTCAAAAGTGAAAGGGAAGATATTGGTTTGCTTGAGAGGAGACACTGCAAGAGTAGACAAAGGAGAACAAGCGGCCCTTGCCGGTGCTGTCGGAATGATTCTATGCAATGATGAGCTAAGTGGGTTCGAAACCATCGCAGATCCCCATGTTCTTCCTGCTTCCCATATCAATTACAATGATGGCCAAGCTATTTTCTCTTACATCAAATCCACCAAGAATCCGATGGGGTATTTAATCCCACCATCGGCAAAAGTTAACACCAAACCTGCTCCCACTATGGCAGCCTTTTCATCTCGAGGACCCAACCTTATTTCCCCTGAGATTATCAAGCCAGATGTGACTGCACCGGGTGTGAATATAATTGCAGCATTCTCAGAGGCCGTAAGCCCAACAGGCGAACCATTTGACAATAGAACAGTTCCATTCATAACAATGTCAGGCACCTCCATGTCTTGCCCCCATGTCTCTGGTCTTGTCGGCCTTCTTAGAACTCTCCACCCTCGCTGGAGCCCCTCCGCCATCAAATCTGCCATCATGACCTCTGCCAGAATTCGTGACAACACAAAAAAACCCATGCTCGATGGTGGCTCCCCTGACCTCGCCCCTGCCACCCCCTTTGCCTATGGCTCTGGCCACATTCGCCCTACTGGAGCCATTGACCCCGGCCTCGTCTATGATCTCTCCCCCAATGACTACTTGGAATTCCTCTGCGCCAGTGGCTATAACGAGAAGACCATTCAAGCATTCTCTGATGGCCCTTTCAAATGTCCAGCTTCTGCTTCTATTTTAAACTTCAATTATCCTTCCATTGGGGTTCAGAATCTGACTGGCAGTGTCACCGTCACTAGGAAATTGAAGAACGTTAGCACTCCTGGGGTATACAAAGCCAGAGTTAGGCACCCCAATGGAGTCAAGGTTTTAGTGAAGCCCAAAGTTCTAAAGTTCGAGAGAGTTGGAGAAGAGAAAAGCTTTGAATTGACAATAACTGGAGATGTGCCAGAGGATCAGGTTGTTGACGGCGTGCTGATTTGGACGGATGGCAAGCACTTTGTTAGGAGTCCCATTGTCGTTTCCTCTAGCTTGTTCTGA 2211 47.72 MKHRKMKIYNSILILFSLLLIISPAMAAKKNINGFAAIMDEEEATQLAKTKLENYKNVTEHPEVAAVLPNRAKKLHTTHSWEFMHLEKNGVIPPSSAWRRAKSGKDVIIANLDTGVWPGSKSFGEHGIVGPVPSKWKGGCTDKTPDRVPCNRKLIGAKYFNKGFLAYLKSEDLTASVINSTRDYDGHGSHTLSTAGGSYVSGASAFGLGVGTAKGGSPKARVAAYKVCWPLEDGGCFDADIAEAFDHAIHDRVDVLSLSLGGEPADYYDDGIAIAAFHAMKKGIPVVCSAGNSGPGAQTVSNTAPWILTVGASTVDREFQAPVELQNGHRYMGSSLSKGLKGDKLYQLITGAEAKAKNATAEVAMLCKPKTLDHSKVKGKILVCLRGDTARVDKGEQAALAGAVGMILCNDELSGFETIADPHVLPASHINYNDGQAIFSYIKSTKNPMGYLIPPSAKVNTKPAPTMAAFSSRGPNLISPEIIKPDVTAPGVNIIAAFSEAVSPTGEPFDNRTVPFITMSGTSMSCPHVSGLVGLLRTLHPRWSPSAIKSAIMTSARIRDNTKKPMLDGGSPDLAPATPFAYGSGHIRPTGAIDPGLVYDLSPNDYLEFLCASGYNEKTIQAFSDGPFKCPASASILNFNYPSIGVQNLTGSVTVTRKLKNVSTPGVYKARVRHPNGVKVLVKPKVLKFERVGEEKSFELTITGDVPEDQVVDGVLIWTDGKHFVRSPIVVSSSLF* 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9263042 9267445 + Chy12G212470.1 Chy12g00647 238428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00647 736 Pfam Subtilase family 104 562 IPR000209 GO:0006508|GO:0008236
Chy12g00647 736 PRINTS Subtilisin serine protease family (S8) signature 183 196 IPR015500 -
Chy12g00647 736 PRINTS Subtilisin serine protease family (S8) signature 520 536 IPR015500 -
Chy12g00647 736 PRINTS Subtilisin serine protease family (S8) signature 104 123 IPR015500 -
Chy12g00647 736 ProSitePatterns Serine proteases, subtilase family, serine active site. 521 531 IPR023828 -
Chy12g00647 736 Gene3D - 316 460 - -
Chy12g00647 736 Pfam Fibronectin type-III domain 638 731 IPR041469 -
Chy12g00647 736 CDD PA_subtilisin_like 323 452 - -
Chy12g00647 736 SUPERFAMILY Subtilisin-like 75 597 IPR036852 GO:0004252|GO:0006508
Chy12g00647 736 Pfam PA domain 367 438 IPR003137 -
Chy12g00647 736 PANTHER PEPTIDASE S8 29 733 - -
Chy12g00647 736 SUPERFAMILY PA domain 374 445 IPR046450 -
Chy12g00647 736 CDD Peptidases_S8_3 73 556 IPR034197 -
Chy12g00647 736 Gene3D - 610 734 - -
Chy12g00647 736 ProSiteProfiles Serine proteases, subtilase domain profile. 80 593 - -
Chy12g00647 736 PANTHER BNAC02G33520D PROTEIN 29 733 - -
Chy12g00647 736 Gene3D Peptidase S8/S53 domain 106 606 IPR036852 GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00647 - - - csv:101213582 1348.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01925 Chy-Chr6:23171906 Chy12g00647 Chy-Chr12:9263042 0 dispersed
Chy12g00647 Chy-Chr12:9263042 Chy02g01279 Chy-Chr2:9390286 0 dispersed
Chy12g00647 Chy-Chr12:9263042 Chy12g00648 Chy-Chr12:9284851 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01124 . 10 767 Subtilisin-like Serine Gene Family AT1G04110 67.4 1.4e-310 1062.0
Chy04g00401 . 30 767 Subtilisin-like Serine Gene Family AT1G20150 53.3 2.4e-225 778.9
Chy04g00401 . 6 511 Subtilisin-like Serine Gene Family AT1G20160 61.7 5.4e-171 597.8
Chy03g00859 . 38 489 Subtilisin-like Serine Gene Family AT1G20160 51.4 1.8e-118 423.3
Chy02g00053 . 9 836 Subtilisin-like Serine Gene Family AT1G30600 64.7 1.6e-312 1068.5
Chy07g01221 . 58 376 Subtilisin-like Serine Gene Family AT1G32940 58.5 6.4e-103 372.1
Chy07g01221 . 58 376 Subtilisin-like Serine Gene Family AT1G32950 56.2 1.7e-100 364.0
Chy07g01221 . 34 375 Subtilisin-like Serine Gene Family AT1G32960 57.2 9.5e-113 404.8
Chy07g01220 . 3 334 Subtilisin-like Serine Gene Family AT1G32960 50.6 4.9e-85 312.8
Chy07g01220 . 3 334 Subtilisin-like Serine Gene Family AT1G32970 53.3 2.5e-94 343.6
Chy12g00529 . 263 1000 Subtilisin-like Serine Gene Family AT1G62340 52.4 1.6e-222 769.6
Chy07g01221 . 34 376 Subtilisin-like Serine Gene Family AT1G66220 54.6 7.9e-96 348.6
Chy01g00548 . 2 735 Subtilisin-like Serine Gene Family AT2G04160 64.1 1.9e-278 955.3
Chy06g01925 . 114 853 Subtilisin-like Serine Gene Family AT2G04160 59.1 1.0e-255 879.8
Chy06g01923 . 1465 2207 Subtilisin-like Serine Gene Family AT2G04160 58.3 3.0e-252 868.2
Chy12g00647 . 30 731 Subtilisin-like Serine Gene Family AT2G04160 53.9 2.1e-213 739.2
Chy12g00648 . 3 652 Subtilisin-like Serine Gene Family AT2G04160 52.1 5.6e-190 661.4
Chy06g01918 . 45 627 Subtilisin-like Serine Gene Family AT2G04160 53.6 7.1e-177 617.8
Chy02g01279 . 24 765 Subtilisin-like Serine Gene Family AT2G05920 73.1 0.0e+00 1095.9
Chy02g00861 . 24 760 Subtilisin-like Serine Gene Family AT2G05920 55.0 1.4e-230 796.2
Chy03g01581 . 36 771 Subtilisin-like Serine Gene Family AT2G05920 55.5 6.0e-221 764.2
Chy01g02163 . 33 764 Subtilisin-like Serine Gene Family AT2G05920 53.5 3.2e-214 741.9
Chy06g00888 . 27 772 Subtilisin-like Serine Gene Family AT2G05920 51.5 1.2e-213 740.0
Chy01g02134 . 26 768 Subtilisin-like Serine Gene Family AT2G05920 51.6 2.8e-202 702.2
Chy11g00264 . 15 688 Subtilisin-like Serine Gene Family AT2G05920 51.3 5.0e-191 664.8
Chy05g00874 CCT 21 817 Subtilisin-like Serine Gene Family AT2G19170 82.8 0.0e+00 1354.0
Chy01g02163 . 9 767 Subtilisin-like Serine Gene Family AT3G14067 64.1 1.0e-284 976.1
Chy02g00861 . 9 760 Subtilisin-like Serine Gene Family AT3G14067 54.1 1.9e-225 779.2
Chy02g01279 . 23 761 Subtilisin-like Serine Gene Family AT3G14067 53.5 9.9e-219 756.9
Chy03g01581 . 22 771 Subtilisin-like Serine Gene Family AT3G14067 50.7 5.4e-209 724.5
Chy01g02134 . 8 774 Subtilisin-like Serine Gene Family AT3G14067 50.2 2.6e-203 705.7
Chy11g00264 . 6 690 Subtilisin-like Serine Gene Family AT3G14067 50.7 1.8e-183 639.8
Chy01g02134 . 29 776 Subtilisin-like Serine Gene Family AT3G14240 77.2 0.0e+00 1200.7
Chy11g00264 . 13 697 Subtilisin-like Serine Gene Family AT3G14240 58.7 7.8e-224 773.9
Chy02g00861 . 26 756 Subtilisin-like Serine Gene Family AT3G14240 52.9 9.9e-219 756.9
Chy06g00888 . 28 768 Subtilisin-like Serine Gene Family AT3G14240 50.1 2.6e-211 732.3
Chy02g01279 . 27 757 Subtilisin-like Serine Gene Family AT3G14240 51.4 2.4e-209 725.7
Chy01g02163 . 32 765 Subtilisin-like Serine Gene Family AT3G14240 51.0 3.5e-208 721.8
Chy03g01581 . 38 770 Subtilisin-like Serine Gene Family AT3G14240 50.3 3.8e-202 701.8
Chy10g00140 . 9 567 Subtilisin-like Serine Gene Family AT4G00230 59.9 9.3e-193 670.2
Chy10g01235 . 13 507 Subtilisin-like Serine Gene Family AT4G00230 50.9 1.7e-133 473.4
Chy07g01221 . 58 376 Subtilisin-like Serine Gene Family AT4G10510 56.5 1.0e-100 364.8
Chy07g01220 . 3 334 Subtilisin-like Serine Gene Family AT4G10510 52.1 1.1e-91 334.7
Chy07g01221 . 34 376 Subtilisin-like Serine Gene Family AT4G10520 57.5 1.5e-110 397.5
Chy07g01221 . 34 381 Subtilisin-like Serine Gene Family AT4G10530 55.8 4.0e-108 389.4
Chy07g01221 . 21 376 Subtilisin-like Serine Gene Family AT4G10540 56.6 1.8e-111 400.6
Chy07g01220 . 3 334 Subtilisin-like Serine Gene Family AT4G10540 50.3 9.6e-89 325.1
Chy07g01221 . 58 376 Subtilisin-like Serine Gene Family AT4G10550 56.9 2.4e-102 370.2
Chy02g00053 . 12 836 Subtilisin-like Serine Gene Family AT4G20430 67.6 0.0e+00 1128.2
Chy12g01013 . 1 272 Subtilisin-like Serine Gene Family AT4G21320 78.0 1.1e-125 446.4
Chy07g01221 . 28 376 Subtilisin-like Serine Gene Family AT4G21630 51.2 3.2e-97 353.2
Chy07g01220 . 8 334 Subtilisin-like Serine Gene Family AT4G21630 51.2 1.2e-83 308.1
Chy07g01221 . 28 378 Subtilisin-like Serine Gene Family AT4G21640 51.9 4.8e-98 355.9
Chy07g01221 . 26 376 Subtilisin-like Serine Gene Family AT4G21650 52.0 9.1e-100 361.7
Chy07g01220 . 8 334 Subtilisin-like Serine Gene Family AT4G21650 50.6 2.2e-85 313.9
Chy12g00718 . 47 773 Subtilisin-like Serine Gene Family AT4G26330 55.9 1.7e-233 805.8
Chy05g00874 CCT 9 817 Subtilisin-like Serine Gene Family AT4G30020 82.1 0.0e+00 1346.6
Chy11g00264 . 5 697 Subtilisin-like Serine Gene Family AT4G34980 75.5 6.8e-314 1073.2
Chy01g02134 . 16 776 Subtilisin-like Serine Gene Family AT4G34980 54.2 8.5e-231 797.0
Chy02g00861 . 1 756 Subtilisin-like Serine Gene Family AT4G34980 51.1 6.3e-210 727.6
Chy06g00888 . 1 771 Subtilisin-like Serine Gene Family AT4G34980 50.2 1.6e-208 723.0
Chy02g01279 . 13 757 Subtilisin-like Serine Gene Family AT4G34980 50.4 5.5e-206 714.5
Chy04g01945 . 50 578 Subtilisin-like Serine Gene Family AT5G03620 58.7 4.8e-178 621.3
Chy08g00925 . 14 528 Subtilisin-like Serine Gene Family AT5G03620 59.0 3.0e-172 602.1
Chy10g00140 . 8 565 Subtilisin-like Serine Gene Family AT5G03620 50.6 5.0e-143 505.0
Chy10g01235 . 13 506 Subtilisin-like Serine Gene Family AT5G03620 51.7 5.0e-135 478.4
Chy10g00496 . 4 467 Subtilisin-like Serine Gene Family AT5G03620 52.6 3.0e-127 452.6
Chy07g01221 . 31 375 Subtilisin-like Serine Gene Family AT5G11940 51.6 2.2e-98 357.1
Chy02g01868 . 227 986 Subtilisin-like Serine Gene Family AT5G19660 79.7 0.0e+00 1273.1
Chy02g00053 . 34 610 Subtilisin-like Serine Gene Family AT5G44530 69.9 5.1e-242 833.9
Chy02g00195 . 1 628 Subtilisin-like Serine Gene Family AT5G45640 51.4 4.7e-173 605.1
Chy02g00195 . 1 645 Subtilisin-like Serine Gene Family AT5G45650 55.3 1.6e-200 696.4
Chy06g00888 . 12 770 Subtilisin-like Serine Gene Family AT5G51750 72.4 0.0e+00 1148.3
Chy02g00861 . 21 760 Subtilisin-like Serine Gene Family AT5G51750 53.4 2.7e-232 802.0
Chy03g01581 . 24 771 Subtilisin-like Serine Gene Family AT5G51750 52.0 5.1e-223 771.2
Chy02g01279 . 22 761 Subtilisin-like Serine Gene Family AT5G51750 51.8 8.1e-221 763.8
Chy11g00264 . 16 697 Subtilisin-like Serine Gene Family AT5G51750 51.3 3.0e-191 665.6
Chy10g01235 . 12 679 Subtilisin-like Serine Gene Family AT5G58830 50.1 3.3e-168 589.0
Chy09g01382 . 352 1052 Subtilisin-like Serine Gene Family AT5G59190 50.4 4.4e-186 648.3
Chy10g00496 . 1 644 Subtilisin-like Serine Gene Family AT5G59190 50.2 3.5e-175 612.1
Chy06g01923 . 1465 2210 Subtilisin-like Serine Gene Family AT5G59810 60.4 1.3e-258 889.4
Chy01g00548 . 1 735 Subtilisin-like Serine Gene Family AT5G59810 59.3 1.6e-256 882.5
Chy12g00647 . 29 734 Subtilisin-like Serine Gene Family AT5G59810 60.5 6.8e-244 840.5
Chy06g01925 . 114 853 Subtilisin-like Serine Gene Family AT5G59810 55.1 7.8e-232 800.4
Chy12g00648 . 1 653 Subtilisin-like Serine Gene Family AT5G59810 57.9 1.3e-213 740.0
Chy06g01918 . 52 630 Subtilisin-like Serine Gene Family AT5G59810 55.3 1.7e-178 623.2
Chy02g00861 . 9 762 Subtilisin-like Serine Gene Family AT5G67360 72.4 0.0e+00 1107.0
Chy03g01581 . 10 773 Subtilisin-like Serine Gene Family AT5G67360 64.5 3.6e-290 994.2
Chy02g01279 . 27 762 Subtilisin-like Serine Gene Family AT5G67360 56.1 5.8e-232 800.8
Chy06g00888 . 28 769 Subtilisin-like Serine Gene Family AT5G67360 54.0 9.0e-225 776.9
Chy01g02163 . 1 764 Subtilisin-like Serine Gene Family AT5G67360 53.9 3.0e-220 761.9
Chy01g02134 . 7 771 Subtilisin-like Serine Gene Family AT5G67360 51.8 3.3e-211 731.9
Chy11g00264 . 5 691 Subtilisin-like Serine Gene Family AT5G67360 52.5 5.1e-196 681.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000094 2 9 4 4 4 9 0 9 9 7 6 10 16 7 9 22 9 5 21 9 7 5 6 12 12 10 2 10 10 2 247
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g00647 Chy_Chr12 FPKM 16.828829 22.60663 15.565811 18.762224 3.402959 0.0 5.353445 59.773659 54.149544 53.183666