Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00647 ATGAAGCATCGGAAGATGAAGATCTATAATTCCATTCTCATTTTATTTTCACTCCTTTTGATAATATCACCTGCCATGGCTGCCAAAAAGAATATAAATGGTTTTGCAGCAATTATGGATGAGGAAGAGGCAACCCAGCTTGCAAAAACTAAATTGGAAAATTATAAAAATGTGACAGAACACCCGGAAGTAGCAGCAGTATTGCCAAACAGAGCAAAAAAGTTACACACAACACATTCATGGGAGTTTATGCATTTGGAGAAGAATGGTGTAATTCCCCCTTCATCTGCTTGGCGTAGGGCTAAATCTGGAAAAGACGTCATTATCGCCAATCTTGACACTGGTGTGTGGCCGGGGTCCAAGAGTTTTGGAGAACATGGGATCGTTGGACCTGTTCCATCAAAGTGGAAAGGAGGTTGCACTGATAAAACCCCTGATAGAGTGCCATGTAACAGGAAACTAATAGGAGCAAAGTACTTCAACAAGGGCTTTCTCGCATACTTGAAGTCTGAGGATTTGACAGCATCGGTGATTAACTCCACTCGCGACTACGACGGTCATGGTTCACACACCTTGTCCACGGCTGGGGGCAGCTATGTGTCCGGCGCCAGTGCGTTCGGGTTAGGCGTTGGAACTGCCAAAGGGGGCTCTCCCAAGGCTCGTGTTGCTGCCTATAAGGTTTGCTGGCCACTTGAGGATGGAGGTTGTTTCGACGCTGACATTGCCGAGGCATTTGACCATGCCATTCACGACCGCGTTGATGTTCTTTCGCTCTCCCTTGGTGGCGAGCCAGCCGATTATTATGATGATGGAATCGCCATTGCAGCCTTCCATGCAATGAAGAAGGGAATCCCTGTGGTGTGCTCGGCTGGTAACTCTGGCCCTGGTGCTCAGACTGTTTCTAATACTGCACCTTGGATTTTGACTGTTGGTGCAAGTACTGTGGATCGTGAGTTTCAGGCTCCTGTTGAGCTCCAAAATGGTCACCGTTATATGGGTTCGAGCCTTTCAAAAGGATTAAAGGGAGACAAGCTTTATCAATTAATAACTGGAGCTGAAGCGAAAGCGAAGAACGCCACCGCGGAGGTGGCCATGCTTTGCAAACCAAAAACATTGGATCATTCAAAAGTGAAAGGGAAGATATTGGTTTGCTTGAGAGGAGACACTGCAAGAGTAGACAAAGGAGAACAAGCGGCCCTTGCCGGTGCTGTCGGAATGATTCTATGCAATGATGAGCTAAGTGGGTTCGAAACCATCGCAGATCCCCATGTTCTTCCTGCTTCCCATATCAATTACAATGATGGCCAAGCTATTTTCTCTTACATCAAATCCACCAAGAATCCGATGGGGTATTTAATCCCACCATCGGCAAAAGTTAACACCAAACCTGCTCCCACTATGGCAGCCTTTTCATCTCGAGGACCCAACCTTATTTCCCCTGAGATTATCAAGCCAGATGTGACTGCACCGGGTGTGAATATAATTGCAGCATTCTCAGAGGCCGTAAGCCCAACAGGCGAACCATTTGACAATAGAACAGTTCCATTCATAACAATGTCAGGCACCTCCATGTCTTGCCCCCATGTCTCTGGTCTTGTCGGCCTTCTTAGAACTCTCCACCCTCGCTGGAGCCCCTCCGCCATCAAATCTGCCATCATGACCTCTGCCAGAATTCGTGACAACACAAAAAAACCCATGCTCGATGGTGGCTCCCCTGACCTCGCCCCTGCCACCCCCTTTGCCTATGGCTCTGGCCACATTCGCCCTACTGGAGCCATTGACCCCGGCCTCGTCTATGATCTCTCCCCCAATGACTACTTGGAATTCCTCTGCGCCAGTGGCTATAACGAGAAGACCATTCAAGCATTCTCTGATGGCCCTTTCAAATGTCCAGCTTCTGCTTCTATTTTAAACTTCAATTATCCTTCCATTGGGGTTCAGAATCTGACTGGCAGTGTCACCGTCACTAGGAAATTGAAGAACGTTAGCACTCCTGGGGTATACAAAGCCAGAGTTAGGCACCCCAATGGAGTCAAGGTTTTAGTGAAGCCCAAAGTTCTAAAGTTCGAGAGAGTTGGAGAAGAGAAAAGCTTTGAATTGACAATAACTGGAGATGTGCCAGAGGATCAGGTTGTTGACGGCGTGCTGATTTGGACGGATGGCAAGCACTTTGTTAGGAGTCCCATTGTCGTTTCCTCTAGCTTGTTCTGA 2211 47.72 MKHRKMKIYNSILILFSLLLIISPAMAAKKNINGFAAIMDEEEATQLAKTKLENYKNVTEHPEVAAVLPNRAKKLHTTHSWEFMHLEKNGVIPPSSAWRRAKSGKDVIIANLDTGVWPGSKSFGEHGIVGPVPSKWKGGCTDKTPDRVPCNRKLIGAKYFNKGFLAYLKSEDLTASVINSTRDYDGHGSHTLSTAGGSYVSGASAFGLGVGTAKGGSPKARVAAYKVCWPLEDGGCFDADIAEAFDHAIHDRVDVLSLSLGGEPADYYDDGIAIAAFHAMKKGIPVVCSAGNSGPGAQTVSNTAPWILTVGASTVDREFQAPVELQNGHRYMGSSLSKGLKGDKLYQLITGAEAKAKNATAEVAMLCKPKTLDHSKVKGKILVCLRGDTARVDKGEQAALAGAVGMILCNDELSGFETIADPHVLPASHINYNDGQAIFSYIKSTKNPMGYLIPPSAKVNTKPAPTMAAFSSRGPNLISPEIIKPDVTAPGVNIIAAFSEAVSPTGEPFDNRTVPFITMSGTSMSCPHVSGLVGLLRTLHPRWSPSAIKSAIMTSARIRDNTKKPMLDGGSPDLAPATPFAYGSGHIRPTGAIDPGLVYDLSPNDYLEFLCASGYNEKTIQAFSDGPFKCPASASILNFNYPSIGVQNLTGSVTVTRKLKNVSTPGVYKARVRHPNGVKVLVKPKVLKFERVGEEKSFELTITGDVPEDQVVDGVLIWTDGKHFVRSPIVVSSSLF* 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9263042 9267445 + Chy12G212470.1 Chy12g00647 238428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00647 736 Pfam Subtilase family 104 562 IPR000209 GO:0006508|GO:0008236
Chy12g00647 736 PRINTS Subtilisin serine protease family (S8) signature 183 196 IPR015500 -
Chy12g00647 736 PRINTS Subtilisin serine protease family (S8) signature 520 536 IPR015500 -
Chy12g00647 736 PRINTS Subtilisin serine protease family (S8) signature 104 123 IPR015500 -
Chy12g00647 736 ProSitePatterns Serine proteases, subtilase family, serine active site. 521 531 IPR023828 -
Chy12g00647 736 Gene3D - 316 460 - -
Chy12g00647 736 Pfam Fibronectin type-III domain 638 731 IPR041469 -
Chy12g00647 736 CDD PA_subtilisin_like 323 452 - -
Chy12g00647 736 SUPERFAMILY Subtilisin-like 75 597 IPR036852 GO:0004252|GO:0006508
Chy12g00647 736 Pfam PA domain 367 438 IPR003137 -
Chy12g00647 736 PANTHER PEPTIDASE S8 29 733 - -
Chy12g00647 736 SUPERFAMILY PA domain 374 445 IPR046450 -
Chy12g00647 736 CDD Peptidases_S8_3 73 556 IPR034197 -
Chy12g00647 736 Gene3D - 610 734 - -
Chy12g00647 736 ProSiteProfiles Serine proteases, subtilase domain profile. 80 593 - -
Chy12g00647 736 PANTHER BNAC02G33520D PROTEIN 29 733 - -
Chy12g00647 736 Gene3D Peptidase S8/S53 domain 106 606 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01925 Chy-Chr6:23171906 Chy12g00647 Chy-Chr12:9263042 0 dispersed
Chy12g00647 Chy-Chr12:9263042 Chy02g01279 Chy-Chr2:9390286 0 dispersed
Chy12g00647 Chy-Chr12:9263042 Chy12g00648 Chy-Chr12:9284851 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00647 - - csv:101213582 1348.57