Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00708 ATGGGTTTGAGAAATCACATGGCAGAAGAAAACATCTTTTGTCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCTTCTTCTTCCTCTCCCTCCATCCCTCAAACGAGCATCAAATGCGTTCCAGGGCGATGCCTCCCTTTGTTCACGGAGACAGAGGCCTCGGCGAAGAAGAGCAAAGAAGGGACTCCAGCTGGAGATGGTGAAAGAAAATATTTGGATGTCAAAGCGGAGGATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGTCTCTTATTTTGGTGATGAGAAGAACATGAATGTTTGCGTAAAGAAAGAAGAAATACGCAGCTTGAAGAAAAGCTTCTCTAATTTTAATACTCAAGGAAGGTTTTGGATCCCAACACAAGCTCAAATCCTTGTTGGTCCCATGCAATTTGCTTGCTCAATCTGCAACAAATCATTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTAAGAGGAACACAACCAGCAGCAATGCTAAGGCTTCCATGTTATTGCTGTGCTCAAGGCTGCAAGAACAACATTAACCATCCAAGAGCCAAGCCATTGAAGGACTTCAGAACCCTTCAAACTCATTACAAAAGAAAACATGGCTGTAAGCCGTTTATGTGTAGAAAATGTGGAAAATCTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAAAATTGTGGTAAGCTTTGGTATTGCAGCTGCGGCTCAGATTTCAAACACAAAAGATCTCTAAAAGATCATATTAGATCCTTTGGTAAAGGCCATTCCCCCTGCTCCTCTCTTGATGATGAATGTCTCACTGGTTCTGATGATCAAGAAGATCACTTCTGTTAA 927 41.96 MGLRNHMAEENIFCLQSPTFIEWLKPHNPSSSSPSIPQTSIKCVPGRCLPLFTETEASAKKSKEGTPAGDGERKYLDVKAEDEDMEKVEVGLHIGLPNVGDVSYFGDEKNMNVCVKKEEIRSLKKSFSNFNTQGRFWIPTQAQILVGPMQFACSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGCKPFMCRKCGKSLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHSPCSSLDDECLTGSDDQEDHFC* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10521894 10524219 + Chy12G213080.1 Chy12g00708 238489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00708 308 SUPERFAMILY beta-beta-alpha zinc fingers 142 174 IPR036236 -
Chy12g00708 308 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 46 306 - -
Chy12g00708 308 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Chy12g00708 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Chy12g00708 308 PANTHER ZINC FINGER PROTEIN WIP2 46 306 IPR043584 GO:0003700|GO:0010468
Chy12g00708 308 Gene3D Classic Zinc Finger 150 173 - -
Chy12g00708 308 SMART c2h2final6 198 230 IPR013087 -
Chy12g00708 308 SMART c2h2final6 235 255 IPR013087 -
Chy12g00708 308 SMART c2h2final6 151 173 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00030 Chy-Chr8:1064979 Chy12g00708 Chy-Chr12:10521894 6.86E-105 dispersed
Chy09g00609 Chy-Chr9:7432797 Chy12g00708 Chy-Chr12:10521894 5.58E-98 dispersed
Chy12g00708 Chy-Chr12:10521894 Chy12g00769 Chy-Chr12:11794489 9.70E-23 dispersed
Chy12g00708 Chy-Chr12:10521894 Chy05g00122 Chy-Chr5:942824 1.73E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18847 PF13912 zf-C2H2_6 6.10E-05 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00708 - - csv:101208459 660.603