Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00723 ATGGCCATCGTAAACGGAGGCACTCGAACGGAGTCTGCAAATTCGAATATGGGAGGAGAAAAGCCGAAGGTGGTCGTGATTATGGGGCCGACTGGTTCTGGGAAGTCACGTCTCGCTATTGATTTGGCTTCTTACTTCCCCGTGGAGATCATCAACGCCGACTCTATGCAGGTTTATCGAGGTTTAGACGTTCTCACAAACAAAGTTCCCACCGAAGATCAAAATGGAGTACCGCATCATCTTTTAGGTACGGTGAGTCCAGACGTTGAATTCACGGCTAAAAACTTCCGAAATTCTGCTGTTCATGTTATTGATGGCATAATTTCTCGTGGATGCTTGCCAATGATAGTGGGTGGAACAAATTATTATATACAGGCTCTTGTTAGTCCGTTTCTTCTGGATGATTCTGCAGAAAATGTTGGCGGAGGTTGTTCCATTTATCCTGGAGATGAAGGGCTGGGTGTTGATTTGGATGAGTGCAGAGATGGTTTGAAGTATGACCATAACCATCTTAAAGAGATTGATCCAGTTTCGGCTAACAGAATCCATCCTAATAACCACAGAAAAATAAATCAATACCTAAGTTTGTATTACCGCACTGGGGTTCTTCCCAGCACACTTTTTCAAGGAAAGGCTGCTGAGAATTGGGGTCAAGCCGATAGTTTCAAATATGATTGCTGCTTGATATGTGTTGATGCTTCTGTTCCACAACTTGACGAACATGTTGATTCTAGAGTTGACATCATGATGGCTGCTGGATTGCTTGATGAGGTCTATGACATTTACAACCCAAATGCAAACTATACTAGAGGATTGTGTCAAGCTATTGGTGTTCGGGAGTTTGAAGAATTTTTGAGATGTTATATACCTGAAGGTGGATGCAAAAAAGAAAGTGCTGGGCTTAGTCCAAAAAATTTAATGGAGTGCAATGAGATTTTGAAAGAGAATATGAGGTCAATCCTAACTTCACCTTGTGATGGCCAACCCAGTTTGCTACTAAAAGAAGCCGTAGATAATGTAAAGTTTAATACTAGAAGACTGGTTCGTCGTCAGAGGAGGCAGCTAAAGAGACTGGAAACTTTGTTTGGATGGAAGATCCACTATGTTGATTCCACGGAATATGTAACATGCAAGGTGGAGGATTCATGGACTGCACACGTCGTTGAACCAGCAGTCCAGATAATTAGATCTTTTCTTACAGATGGTTCGGCGACCGAGACAATGAAACCACATAGTCCAGAGCTAATCAAGAAGGACTTGTGGACACAATATATATGCCAGGCTTGTGGGAATAAAGTATTAAGAGGAGCACATGAATGGGAACAACACAATCAAGGTCGAACACATCGAAAACGAATGTATCGGCTTAAGAAGAAGTGTGAAGGACTTCCCTTGCTGCACCAGAAACTACCTCCTCAAGAATAA 1425 42.39 MAIVNGGTRTESANSNMGGEKPKVVVIMGPTGSGKSRLAIDLASYFPVEIINADSMQVYRGLDVLTNKVPTEDQNGVPHHLLGTVSPDVEFTAKNFRNSAVHVIDGIISRGCLPMIVGGTNYYIQALVSPFLLDDSAENVGGGCSIYPGDEGLGVDLDECRDGLKYDHNHLKEIDPVSANRIHPNNHRKINQYLSLYYRTGVLPSTLFQGKAAENWGQADSFKYDCCLICVDASVPQLDEHVDSRVDIMMAAGLLDEVYDIYNPNANYTRGLCQAIGVREFEEFLRCYIPEGGCKKESAGLSPKNLMECNEILKENMRSILTSPCDGQPSLLLKEAVDNVKFNTRRLVRRQRRQLKRLETLFGWKIHYVDSTEYVTCKVEDSWTAHVVEPAVQIIRSFLTDGSATETMKPHSPELIKKDLWTQYICQACGNKVLRGAHEWEQHNQGRTHRKRMYRLKKKCEGLPLLHQKLPPQE* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10837023 10846269 + Chy12G213230.1 Chy12g00723 238504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00723 474 Gene3D - 22 421 IPR027417 -
Chy12g00723 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 130 IPR027417 -
Chy12g00723 474 TIGRFAM miaA: tRNA dimethylallyltransferase 24 286 IPR018022 GO:0008033
Chy12g00723 474 Hamap tRNA dimethylallyltransferase [miaA]. 24 376 IPR018022 GO:0008033
Chy12g00723 474 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 403 - -
Chy12g00723 474 Gene3D Classic Zinc Finger 422 462 - -
Chy12g00723 474 Pfam IPP transferase 57 356 - -
Chy12g00723 474 Gene3D - 156 211 - -
Chy12g00723 474 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 403 IPR039657 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00963 Chy-Chr7:14266215 Chy12g00723 Chy-Chr12:10837023 7.21E-18 dispersed
Chy11g01432 Chy-Chr11:21097821 Chy12g00723 Chy-Chr12:10837023 1.34E-16 dispersed
Chy12g00723 Chy-Chr12:10837023 Chy06g00620 Chy-Chr6:4215619 4.91E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00723 K00791 - csv:101202758 946.421