Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00749 ATGTCTCGCCGAGGCGGCGGCGGCGGTCGTGGTTCGGGTGGTCGTGGTGGACAGCCCTCTCCGGCTATATCTCGCGATGGAAGAGGCGGACGAGGCGGACGAGGCGGACGAGGCGGTGGAGGGAGAGATGGAGGCAGGGTAGGTTATCCGGCCACACAGCAGTTCCATTCTCCAACTTCTCAGCCTACTCCGGTTGTTTCTCCTCCTCCTCAGTCTACTCCGGTTGCTTCCGCTCCTCCTTCCCAGCCTACTCCGGTTGCTTCCGCTCCTCCTCCCCAGACGTCAACGGGAGCATCTTCTGCTTCCTCATCGGGAACTGCTACGCTCTCACAGTCTGAGGTTTCTAAGATCGAAGCACAATTGGAGAAGACGACACTGATGCCGCAGAACGTTCCGCCGTCTTCATCTAAAGACTTGACTGTGGCGAAGAGGCCGGGATATGGAACCGCTGGTCGAAAAGTTGTTGTTCGTGCCAATCATTTCCTGGTTCAAGTTGCAGACAGAGATCTCCACCATTACGATGTTTCAATCACACCTGAGGTTACATCCAAAAGGGTCTGCCGAGATATAATAAACCAGCTTGCAAATACGTACAGAGAATCTCATTTAGGTGGAAGATATCTAGCATATGATGGAGGAAAAAGTGTTTATGCTGCTGGTCAACTACCATTTTCGTCTAAAGAGTTCATGATTAAATTAGTCCGTAAAGATGGTGCTGGGTCTTCTCAACCAACAAGGAAAGAACGAGAGTTCAAAGTATCTATCAAATTTGCCTCCAAACCAGACCTCCATCATCTACAACAGTTTATACATGGACGGCAGCGAGATGCACCACAGGAGACTATACAAGTTCTAGATGTTGTTTTGAGAACAAAACCATCTGTCAGGTACACAGTTGTTGGAAGGTCATTTTTTTCGCATGAACTGGGGCAGCCAGGTGAACTCGGTAATGGTGTTGAGTATTGGAGGGGATATTACCAAAGTCTACGACCTGTACAAATGGGTTTATCTTTAAATATAGATGTGTCAGCTAGATCATTCTATGAACCAATATGTGTGACAGAATATGTTGTTAAACACTTCAACCTAAGGAATTTCTCAAAGCCACTGTCTGATCAGGATTGCCGCAAGATCAGAAAGGTACTTAGAGGAGTGAAGGTTGGATTAACGTGTAGGGAGCATGCCAGGACCTACAAGATTACTGGGATATCATCAGAGCCTGTTAATAGATTAATGTTTACTCTTGATGATCAGAAAACCCGAATCTCTGTTGCACAGTACTTCCATGAAAAATATGGTGTGGTACTCAAATATCCATCTCTACCAGCTATACAAGCTGGTAATGATGCCAAGCCGGTTTATTTGCCTATGGAGGTTTGTAAGATTGTTGCTGGGCAGAGATATACCAAAAAATTGAATGAACGCCAAGTAACTGAGATGCTAAGAGCGACTTGTCAGAGACCTACGAACAGGGCAGATAGTATAACGAAGATGATTGGTAAGATTGATCATTCTAAAGATGACATTGTCAACGATTTTGGCATTAATATTGTATCATCAGGGTTATGTGATGTTGGTGCTCGTGTTTTACCGTCCCCAATGCTAAAATATCATGATACTGGCAAAGAATCAAGAGTTGATCCAAGGATGGGTCAGTGGAATATGATTAACAAGAAAATGATCAATGGTGGTAGAGTTGATTATTGGGGCTGTGTGAACTTCTCTTCACGGTTGGATCCAGGCTTGCCATCTGAATTTTGCCATCAGTTGGTTAGCATGTGCAGTAGCAAAGGAATGGTTTTCAACCCTACACCGCTGTTTCCTGTACGTACTGCACATGCAAACCAAATTGATGGTGCACTTAGAGACATTCATAGCCAGTCTTTAAAAAGTTTGGGACCCCAGGGCAAATCTCTTCAGTTGCTCATAATTATTTTACCTGATATTTCTGGTTCCTATGGGAAGATCAAAAGGATTTGTGAGACTGAGCTTGGAATTGTTTCACAATGTTGCCAACCTAGGCAAGCACAAAAGCTGAACAAGCAGTACTTTGAAAATGTGGCCCTTAAAATTAACGTTAAGGTTGGGGGAAGAAACAATGTCCTAAATGATGCTATTCAGCGGAAAATTCCACTTGTTTCAGATCGGCCTACAATAATCTTTGGAGCAGATGTAACACACCCACAACCTGGAGAGGACTCCAGTCCTTCAATAGCAGCTGTTGTTGCCTCAATGGACTGGCCCGAGGTAACGAAGTATAGAGGAATCGTTTCAGCCCAGGGCCACCGTGATGAAATTATACAAGATTTGTACAGAGAAGATAAAGATCCACAAAAAGGGTTGGTGCATGCAGGAATGATCAGGGAGCTGTTCATTGCTTTTAGAAGGTCAACAAATCTGAAACCGCACAGAATAATATTTTACAGAGATGGTGTAAGTGAAGGACAGTTCTCACAAGTTTTATTTTATGAGGTGGATGCAATTAGGAAGGCGTGTGCCTCTCTTGAAGAGGGTTACCAGCCTCCGATTACCTTTGTTGTGGTGCAAAAGAGACATCATACCCGTCTTTTTCCTATCAGCGGTGCAGATACTGATCGGAGTGGAAACATCCTTCCAGGTTATCAATCTTATTATCTAACTTGTGGTTCATGTCAGATGATTCTTCATGCAAAATTTAAATTATCCTGTTTGTATTTGATGATAGGTACTGTTGTTGACACCAATATTTGTCATCCAACTGAATTTGATTTCTATTTAAACAGCCATGCCGGCATTCAGGGGACGAGTAGGCCAACACATTATCACGTTTTGTATGATGAAAACAAATTCACTGCCGATGCAATGCAGACTCTTACTAATAATCTTTGCTACACGTATGCAAGGTGCACTCGGTCGGTTTCCATTGTTCCACCAGCATACTATGCCCATCTTGCAGCCTTTCGTGCTCGTTATTACATAGAGGGTGATTCATCTGACAGCGGTTCCACAAGTTCAGGTGGTGGGAATGTAGAGATTCAACGGCTGCCGAGCATAAAAGAAAATGTGAAGGATGTGATGTTTTACTGTTGA 3069 43.96 MSRRGGGGGRGSGGRGGQPSPAISRDGRGGRGGRGGRGGGGRDGGRVGYPATQQFHSPTSQPTPVVSPPPQSTPVASAPPSQPTPVASAPPPQTSTGASSASSSGTATLSQSEVSKIEAQLEKTTLMPQNVPPSSSKDLTVAKRPGYGTAGRKVVVRANHFLVQVADRDLHHYDVSITPEVTSKRVCRDIINQLANTYRESHLGGRYLAYDGGKSVYAAGQLPFSSKEFMIKLVRKDGAGSSQPTRKEREFKVSIKFASKPDLHHLQQFIHGRQRDAPQETIQVLDVVLRTKPSVRYTVVGRSFFSHELGQPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPICVTEYVVKHFNLRNFSKPLSDQDCRKIRKVLRGVKVGLTCREHARTYKITGISSEPVNRLMFTLDDQKTRISVAQYFHEKYGVVLKYPSLPAIQAGNDAKPVYLPMEVCKIVAGQRYTKKLNERQVTEMLRATCQRPTNRADSITKMIGKIDHSKDDIVNDFGINIVSSGLCDVGARVLPSPMLKYHDTGKESRVDPRMGQWNMINKKMINGGRVDYWGCVNFSSRLDPGLPSEFCHQLVSMCSSKGMVFNPTPLFPVRTAHANQIDGALRDIHSQSLKSLGPQGKSLQLLIIILPDISGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLNDAIQRKIPLVSDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQGHRDEIIQDLYREDKDPQKGLVHAGMIRELFIAFRRSTNLKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACASLEEGYQPPITFVVVQKRHHTRLFPISGADTDRSGNILPGYQSYYLTCGSCQMILHAKFKLSCLYLMIGTVVDTNICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADAMQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDSSDSGSTSSGGGNVEIQRLPSIKENVKDVMFYC* 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11488840 11495562 + Chy12G213490.1 Chy12g00749 238530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00749 1022 MobiDBLite consensus disorder prediction 91 114 - -
Chy12g00749 1022 CDD Piwi_ago-like 509 986 IPR045246 -
Chy12g00749 1022 Pfam Argonaute linker 2 domain 491 537 IPR032472 -
Chy12g00749 1022 PANTHER PROTEIN ARGONAUTE 1A 56 874 - -
Chy12g00749 1022 PANTHER PROTEIN ARGONAUTE 1A 900 1006 - -
Chy12g00749 1022 SMART PAZ_2_a_3 353 486 IPR003100 GO:0005515
Chy12g00749 1022 Pfam N-terminal domain of argonaute 152 289 IPR032474 -
Chy12g00749 1022 Pfam Argonaute linker 1 domain 300 349 IPR014811 -
Chy12g00749 1022 CDD PAZ_argonaute_like 350 463 - -
Chy12g00749 1022 SUPERFAMILY PAZ domain 347 504 IPR036085 GO:0005515
Chy12g00749 1022 SMART DUF1785_2 298 350 IPR014811 -
Chy12g00749 1022 Pfam Piwi domain 643 986 IPR003165 GO:0003676
Chy12g00749 1022 Gene3D - 529 704 - -
Chy12g00749 1022 SUPERFAMILY Ribonuclease H-like 637 988 IPR012337 -
Chy12g00749 1022 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 900 1006 - -
Chy12g00749 1022 ProSiteProfiles Piwi domain profile. 641 987 IPR003165 GO:0003676
Chy12g00749 1022 Pfam PAZ domain 374 481 IPR003100 GO:0005515
Chy12g00749 1022 Gene3D - 710 1022 IPR036397 GO:0003676
Chy12g00749 1022 Pfam Mid domain of argonaute 548 626 IPR032473 -
Chy12g00749 1022 MobiDBLite consensus disorder prediction 1 114 - -
Chy12g00749 1022 Gene3D paz domain 345 468 - -
Chy12g00749 1022 MobiDBLite consensus disorder prediction 123 137 - -
Chy12g00749 1022 SMART Piwi_a_2 641 987 IPR003165 GO:0003676
Chy12g00749 1022 MobiDBLite consensus disorder prediction 123 142 - -
Chy12g00749 1022 MobiDBLite consensus disorder prediction 62 90 - -
Chy12g00749 1022 ProSiteProfiles PAZ domain profile. 355 464 IPR003100 GO:0005515
Chy12g00749 1022 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 56 874 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00749 Chy-Chr12:11488840 Chy12g01567 Chy-Chr12:19234555 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00749 K11593 - csv:116403995 1755.73