Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00769 ATGCTTTCTCTTCCTTCACAACATCCCTTGGTTTCATCTTCTAATGATCATCATGAATCCCTAGATAACCTTCTTTCTTCTTATTCCCAATCAAGCAATACTCTCCTTTATAACCTCTCAATTTTGAAGGAGAAACTCCACCAAATCCAATCCGTTGTCAACATCGCCGTTTACAATCTTCAAAGCTCAACGGAATCTCTTCCCTCTGCCCCGGCCTCATCCCAGTCACCAGTGGCGACTGCAGCCGTTAATTCTTTGATCCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTTACTTGTCAACAAATGGATAATCTCGTTGTGAACGCCTCCTTACACAACAACAACGTTGGTAACAACCTCCAAGGCCAACACCACCAGCACCAGCACCAGCATCAAGGTCCCGTTGACGATAACAATGGACGATCCAACACTCTTTTCAATATGGCCAACGACCATCATCACCAACGACAGGATTGGTACAACACGACTACGTCTAATAATTATAACAAAGACAACAACAACGGTAGAACAATGACAACAAAAACAACACAAGATCATCGAAATCCGATCAATATAGTGGAGCTAGATGCATCGGATCTTCTAGCAAAATACACCCACTATTGTCAAATTTGCGGGAAAGGGTTCAAGCGAGATGCAAACCTTAGAATGCACATGCGAGCACACGGGGACGAGTACAAAGCAAGCGGAGCTTTGAGCAACCCCGAGAAGAGCCATAGAAAGGACTTGAGTAACATAAGCAAGATGGGGATCAAATATTCATGTCCACAAGAAGGCTGCAGATGGAACCAAAAACATGTGAAGTTTCAACCATTGAAATCACTGATTTGTGTGAAAAATCACTTCAAAAGAACTCATTGTCCCAAAATGTATGTTTGCAAATTGTGTAGTAGGAAGAAATTTTCGGTGCTTTCTGATTTGAGGACTCATGAGAAGCATTGTGGGGATGTGAAATGGCTATGTTCTTGTGGTACCACATTTTCCAGGAAAGATAAGCTGATGGGTCATGTTGCTTTGTTTGTCGGGCACACTCCAGCCATAGGTTCGTCGACGAAATTCTCGGGAAAACAAGAACATGAGTATGTTCATTCATTCTAA 1122 42.69 MLSLPSQHPLVSSSNDHHESLDNLLSSYSQSSNTLLYNLSILKEKLHQIQSVVNIAVYNLQSSTESLPSAPASSQSPVATAAVNSLIQELIMAASSMLFTCQQMDNLVVNASLHNNNVGNNLQGQHHQHQHQHQGPVDDNNGRSNTLFNMANDHHHQRQDWYNTTTSNNYNKDNNNGRTMTTKTTQDHRNPINIVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHRKDLSNISKMGIKYSCPQEGCRWNQKHVKFQPLKSLICVKNHFKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVALFVGHTPAIGSSTKFSGKQEHEYVHSF* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11794489 11795610 - Chy12G213690.1 Chy12g00769 238550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00769 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Chy12g00769 373 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 17 368 IPR044300 GO:0010044|GO:0010447
Chy12g00769 373 MobiDBLite consensus disorder prediction 161 185 - -
Chy12g00769 373 PANTHER OS08G0562300 PROTEIN 17 368 - -
Chy12g00769 373 SUPERFAMILY beta-beta-alpha zinc fingers 206 233 IPR036236 -
Chy12g00769 373 SMART c2h2final6 208 230 IPR013087 -
Chy12g00769 373 SMART c2h2final6 261 294 IPR013087 -
Chy12g00769 373 SMART c2h2final6 299 321 IPR013087 -
Chy12g00769 373 Gene3D Classic Zinc Finger 182 265 - -
Chy12g00769 373 Pfam Zinc finger, C2H2 type 208 230 IPR013087 -
Chy12g00769 373 MobiDBLite consensus disorder prediction 118 185 - -
Chy12g00769 373 Gene3D Classic Zinc Finger 297 347 - -
Chy12g00769 373 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Chy12g00769 373 MobiDBLite consensus disorder prediction 137 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00726 Chy-Chr2:4428239 Chy12g00769 Chy-Chr12:11794489 5.92E-70 dispersed
Chy05g00122 Chy-Chr5:942824 Chy12g00769 Chy-Chr12:11794489 7.42E-20 dispersed
Chy12g00708 Chy-Chr12:10521894 Chy12g00769 Chy-Chr12:11794489 9.70E-23 dispersed
Chy12g00769 Chy-Chr12:11794489 Chy01g01661 Chy-Chr1:22549641 1.59E-23 dispersed
Chy12g00769 Chy-Chr12:11794489 Chy03g01477 Chy-Chr3:17237665 4.20E-24 transposed
Chy12g00769 Chy-Chr12:11794489 Chy01g00470 Chy-Chr1:3401406 2.31E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18851 PF00096 zf-C2H2 9.60E-05 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00769 - - csv:101203636 696.041