Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00776 ATGGCCATGGCTATGGCCCATCACAGGGAGAGTGGCGATGGGGGTATCAATGGCCACCTTGACAGCACTGGGAAATATGTCCGTTACACGACGGAGCAAGTGGAAGCTCTTGAGCGAGTCTATGCGGAATGCCCTAAACCAAGCTCTTTGCGCCGCCAGCAGCTGGTTCGTGATTGCCCCATTTTAGCCAACATCGAACCCAAGCAGATCAAAGTCTGGTTCCAAAACCGCAGATGTAGAGAGAAACAAAGAAAAGAGGCTTCTCGTTTACAGTCACTAAACAGTAAATTGACGGCCATGAACAAGCTGTTGATGGAGGAGAATGATAGGTTGCAGAAGCAAGTGTCTCAGCTCGTCTGTGAGAATGGGTATATGCGCCAACATTTGCAAACTACTAATGCACCAGCAGCAACAACTACTGATGCAGCTTGTGACTCAGTGGCTACTACGCCTCAGCATTCACTTAGAGATGCTAGTAGCCCTGCTGGACTCTTGTCTATTGCAGAGGAGATTTTGGCAGCCTTCCTGTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTGGGAATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCCGCACGAGCTTGTGGTCTTGTCAGTTTAGAGCCCATGAAGATCGCAGAGATCCTAAAAGATCGTACATCTTGGTTTCGGGATTGTCGGAGCCTTGAAGTCTTTACAACGCTTCCCACTGGTGATGGTGGAACAATCGAACTTGTTTATACGCAGGTGTATGCTCCTACTACATTAGCGCCTGCACGAGATTTTTGGACTCTAAGATACACCAAAACTTTAGAAAATGGCAATCTTGTGGTAAAAGTTCCTCCTAGTATGCTTCATTATCCTTTTTTGAATAATAGTGTATGCTTACTTCTCTTCTTCTTTGAGGTTTGTGAGAGATCGCTGTCTGGATCTGGCACCGGGCCGAATGCAGCTTCTGCTTCTCAATTTATAAGAGCCGAAATGCTTCCCTGTGGCTATTTGATTCGTCCATGTGATGGTGGTGGTTCGATCATCCACATTGTAGACCACCTAAATCTTGAGCCTTGGGGTGTTCCAGAGGTAGTACGACCACTTTACGAATCATCAAAAGCTGTGGCCCAGAAAATGACTATAGCAGCTCTTCGCTATGTGAGGCAAATCGCTCAAGAGACCAGTGGTGAAGTAGTATACAGTTTAGGCAGGCAACCAGCTGTTCTACGAACTTTCAGCCAAAGATTGAGCAGAGGATTTAATGATGCTGTCAACGGATTCAATGATGATGGGTGGTCTTTGGTCAATTGTGATGGAGCTGATGATGTGATCCTTGCCATAAATTCGAGTAAGAATCTAAATACATCATATGATCCAGTCAATTCTCTTGCATTCCACGGGGGAATCCTTTGTGCAAAGGCTTCAATGCTTCTCCAAAATGTTCCTCCAATTGCTCTAATTCGCTTCTTGAGGGAGCATCGGTCCGAGTGGGCTGATTTCAATGTTGATGCCTACTCTGCTGCATCATTAAAAACTGGATCGTATGTGTACCCAGGCATGAGACCAACAAGGTTTACAGGGAGCCAAATCATCATGCCACTCGGTCATACAATTGAACAAGAGGAGTTGCTTGAAGTTGTAAGACTTGAAAGTCACCCTCTTGCTCAAGAAGATGCTTTTATGTCCCGGGACATTCATCTCTTGCAGATGTGTACCGGCATTGATGAGAATGCTGTTGGGGCATGTTCCGAACTTGTGTTTGCTCCAATCGATGAGATGTTTCCTGATGATGCTGTGCTATTGGCCTCTGGTTTCAGGATCATCCCATTACATTCTAAAACAAGTGACCCAAAAGATACATGGAACTCGAATAGGACTCTGGATCTCACTTCCAGTCTTGAAGTTGGCTCTTCTGCTTCTCAAGATGCAGCTGTGGCGGCTGCTGCATCTACTTCTAACTCCAGATCGGTTTTGACCATCGCTTTCCAGTTCCCATTCGGTAGCAACTTGCAGAATAATGTTGCAGCAATGGCTAGACAGTATGTCCGGAGTGTCGTTTCAGCTGTGCAGAGGGTTGCAGTTGCCATATCTCCCTCTGGGTTAAGCTCGCCATCAGAGCCAAAGCTATCATCTGCTTGTCCAGAAGCTCTTACACTGGCTCGATGGATCTGTCATAGCTACAGATGCCATATGGGAACAGAGTTGGCAACATCTGAGAGTGTGGACGGTGACTCAGTGTTGAAACATCTATGGAATCATCAGGATGCAATTCTCTGCTGTTCCCTCAAGTCACTGCCCCCAGTGTTCATGTTTGCAAACCAAGCAGGCCTTGACATGTTGGAGACAACATTGGTTGCCTTACAAGACATCACTTTGGATAAAATTTTTGGTGATTCGGCCCGCAAGGCTTTCTCTGCTGTTTTTTCCAGCTTAATGAACCAGGGCTTTGCTTACATTCCTGCTGGAATTTGTATGTCAACAATGGGACGACATGCTTCCTTTGAACAAGCTGTTGCATGGAAAGTCCTTGCAGAAGATGAGTCTACCGTGCACTGTCTTGCCTTCTCCTTCGTCAATTGGTCGTTCCTGTGA 2625 46.55 MAMAMAHHRESGDGGINGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQHLQTTNAPAATTTDAACDSVATTPQHSLRDASSPAGLLSIAEEILAAFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPMKIAEILKDRTSWFRDCRSLEVFTTLPTGDGGTIELVYTQVYAPTTLAPARDFWTLRYTKTLENGNLVVKVPPSMLHYPFLNNSVCLLLFFFEVCERSLSGSGTGPNAASASQFIRAEMLPCGYLIRPCDGGGSIIHIVDHLNLEPWGVPEVVRPLYESSKAVAQKMTIAALRYVRQIAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLVNCDGADDVILAINSSKNLNTSYDPVNSLAFHGGILCAKASMLLQNVPPIALIRFLREHRSEWADFNVDAYSAASLKTGSYVYPGMRPTRFTGSQIIMPLGHTIEQEELLEVVRLESHPLAQEDAFMSRDIHLLQMCTGIDENAVGACSELVFAPIDEMFPDDAVLLASGFRIIPLHSKTSDPKDTWNSNRTLDLTSSLEVGSSASQDAAVAAAASTSNSRSVLTIAFQFPFGSNLQNNVAAMARQYVRSVVSAVQRVAVAISPSGLSSPSEPKLSSACPEALTLARWICHSYRCHMGTELATSESVDGDSVLKHLWNHQDAILCCSLKSLPPVFMFANQAGLDMLETTLVALQDITLDKIFGDSARKAFSAVFSSLMNQGFAYIPAGICMSTMGRHASFEQAVAWKVLAEDESTVHCLAFSFVNWSFL* 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12088691 12095090 + Chy12G213760.1 Chy12g00776 238557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00776 874 Pfam MEKHLA domain 729 873 IPR013978 -
Chy12g00776 874 Gene3D - 19 91 - -
Chy12g00776 874 SMART HOX_1 22 88 IPR001356 GO:0003677
Chy12g00776 874 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Chy12g00776 874 SMART START_1 166 401 IPR002913 GO:0008289
Chy12g00776 874 Coils Coil 90 121 - -
Chy12g00776 874 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 292 IPR044830 GO:0003700
Chy12g00776 874 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 317 874 IPR044830 GO:0003700
Chy12g00776 874 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 292 - -
Chy12g00776 874 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 317 874 - -
Chy12g00776 874 Pfam Homeodomain 26 83 IPR001356 GO:0003677
Chy12g00776 874 Pfam START domain 317 400 IPR002913 GO:0008289
Chy12g00776 874 Pfam START domain 167 292 IPR002913 GO:0008289
Chy12g00776 874 CDD bZIP 77 116 - -
Chy12g00776 874 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Chy12g00776 874 CDD homeodomain 25 85 IPR001356 GO:0003677
Chy12g00776 874 ProSiteProfiles START domain profile. 157 410 IPR002913 GO:0008289
Chy12g00776 874 SUPERFAMILY Bet v1-like 166 403 - -
Chy12g00776 874 Gene3D - 203 407 IPR023393 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy11g00810 Chy12g00776 CCT
Chy11g00810 Chy12g00776 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00385 Chy-Chr12:4527977 Chy12g00776 Chy-Chr12:12088691 0 dispersed
Chy12g00776 Chy-Chr12:12088691 Chy02g00386 Chy-Chr2:2460284 5.18E-20 dispersed
Chy11g00810 Chy-Chr11:11625569 Chy12g00776 Chy-Chr12:12088691 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18852 PF08670 MEKHLA 1.60E-44 CL0183 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00776 K09338 - cpap:110820480 1358.97