Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00786 ATGGGTTCCACTTGGAAGAAGGTGAAAGTAGCACTTGGCTTGAATATGTGCCTCTATGGCCCTCGAAATCTCCATGATTCTTTGCCTTCCATGGCTTCTAGGTCCTCCGACGCCGTCGCACCGCCGAATTTGCTTTCTTCAGCTAGTTTTAGCTCTGATTGTCGCCCGGCAGCAACACCCACTTCGTCGTCATCCGGTCTCAGGCTCTCGAAATCTTCAACCAGATCATCTAAGAGGACATGTGCGATTTGCCTAACTGCTATGAAGCCAGGGAAGGGTCATGCTATCTTCACTGCTGAGTGTTCCCACTCATTTCATTTCCATTGCATAACCTCAAATGTTAAGCATGGAAACCAAATTTGCCCAGTTTGCAGGGCGAAATGGAAAGAAATTCCTTTCCAGAGCCCTGCTTCAGATCTTCCCAGTGGAATGATGAGAATCAATCAAATTGATTGGCCACAAGATGACTCCTGGATGACCGTTATAAGAAGGATTCGTCCCCCACCGATTGATGCGTCTAGGCAGATAGCAGCTCTATCTCATGGGCCTGAACCAAGTCTGTTTGATGATGATGAAGTCCTAGATCATCAGTCTGACATCCCTGATGGAGGAACATCTGTTGTAGATGCTATTGATGGTTCTACTGGAACAATTGAGGTTAAGACATATCCTGAAGTTTCAGCTGTTGCTCGATCAGCAGTTCACGATAATTTCACTGTACTAGTGCATATCAAAGCTAGTCTTGCAAATCAGAGGCAACATTGTTGTGAAAATCAGTCCTCATTTCTTCTGTCTCAAAGTTCTCGTGCTCCAGTTGACCTTGTTACAGTTCTTGATGTCAGTGGGAGCATGGCCGGTACTAAGCTTGCTTTGCTAAAACGAGCAATGGGTTTTGTGATACAGAACCTTGGCCCCTCAGATCGGCTTTCAGTAATTTCCTTCTCGTCTGCAGCACGACGCCTCTTTCCTCTTCGCCGGATGACTGAAAATGGACGACAACAGGCATTACAAGCTATTAATTCTTTGGTTTCAAATGGTGGAACAAACATCGTTGATGGCTTAAACAAAGGAACGAAAGTATTATTGGATCGGAAGTGGAAAAATCCTGTTTGTAGTATTATGCTACTTTCAGATGGCCAGGATACATATACTTTTGGCATTGGTAGTTCACATTCTGAAACCGACTACCTTTCACTTCTTCCAGTATCAATCCATCGCAATAACAACACAGCGCTGCAGATACCCGTTCATTCATTTGGTTTTGGTACTGACCATGATGCTACGGCAATGCACTCTATCTCTGAGATATCGGGGGGAACGTTTTCATTTGTAGAAGCAGAGAGGACTATCCAGGATGCGTTTGCGCAGTGCATTGGAGGGCTCTTGAGTGTTGTTGTGCAACAACTTCAAGTTAGAATTGAGTGTGTTCATCCTAATTTGCAGCTCAGTTCACTGAAAGCAGGAAATTACCGATCAAACATCGCAGCAAGCTCAAGAATTGGTACTGTAAATGTTGGAGATCTGTATGCTGAAGAAGAAAGAGACTTTTTGGTGACAATCAATGTACCCGTTGATGGTTCCATTGATGAGATGTCATTGCTCAATGTCAAATGTACTTACCGAAATCCCATCACGAATGAAATGGTGACTTTAGAAGACATCGAGGAAGTAAAGATAAGAAGGCCAAATGTGATTGGAGAACAATCTGTATCAATAGAAGTCGACAGGCAACGCAATCGGGTTCATGCCTTGGAGTCAATGGCCAAAGCAAGAGTTGCGGCCGAACGTGGTGATTTGGCCAATGCAGTCTCTGTCTTGGAGAATTGTTACAGGGCATTATCAGAAACCATCTCAGGACAAGCTGGTGATCATTTGTGCACTGCACTTTGTGCTGAGCTGAAGGAGATGAAGGAACGAATGGAAAACCAACGCATCTACGAGGCTTCGGGAAGGGCGTACGTTCTATCAGGACTAAGCTCTCATTCATGGCAACGAGCCACTGCACGTGGTGATTCAACACGCAACGGAAGCCTTGTGCAAGCTTACCAAACCCCATCAATGGTAGACATGTTGACTCGTTCTCAAACCATGTTACCTGGGAACCCAACGCCACGGCCCCAAAGAACACTCCGTCCTACCATGACATTTCCTGCTCGAAGTCGTCAACGGTAG 2172 45.35 MGSTWKKVKVALGLNMCLYGPRNLHDSLPSMASRSSDAVAPPNLLSSASFSSDCRPAATPTSSSSGLRLSKSSTRSSKRTCAICLTAMKPGKGHAIFTAECSHSFHFHCITSNVKHGNQICPVCRAKWKEIPFQSPASDLPSGMMRINQIDWPQDDSWMTVIRRIRPPPIDASRQIAALSHGPEPSLFDDDEVLDHQSDIPDGGTSVVDAIDGSTGTIEVKTYPEVSAVARSAVHDNFTVLVHIKASLANQRQHCCENQSSFLLSQSSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVISFSSAARRLFPLRRMTENGRQQALQAINSLVSNGGTNIVDGLNKGTKVLLDRKWKNPVCSIMLLSDGQDTYTFGIGSSHSETDYLSLLPVSIHRNNNTALQIPVHSFGFGTDHDATAMHSISEISGGTFSFVEAERTIQDAFAQCIGGLLSVVVQQLQVRIECVHPNLQLSSLKAGNYRSNIAASSRIGTVNVGDLYAEEERDFLVTINVPVDGSIDEMSLLNVKCTYRNPITNEMVTLEDIEEVKIRRPNVIGEQSVSIEVDRQRNRVHALESMAKARVAAERGDLANAVSVLENCYRALSETISGQAGDHLCTALCAELKEMKERMENQRIYEASGRAYVLSGLSSHSWQRATARGDSTRNGSLVQAYQTPSMVDMLTRSQTMLPGNPTPRPQRTLRPTMTFPARSRQR* 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12268962 12273341 - Chy12G213860.1 Chy12g00786 238567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00786 723 SUPERFAMILY vWA-like 273 483 IPR036465 -
Chy12g00786 723 Pfam VWA / Hh protein intein-like 623 696 IPR032838 -
Chy12g00786 723 MobiDBLite consensus disorder prediction 50 72 - -
Chy12g00786 723 ProSiteProfiles VWFA domain profile. 273 458 IPR002035 -
Chy12g00786 723 CDD vWA_C3HC4_type 272 445 - -
Chy12g00786 723 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 4 721 - -
Chy12g00786 723 ProSiteProfiles Zinc finger RING-type profile. 81 125 IPR001841 -
Chy12g00786 723 Pfam RING-like zinc finger 81 110 IPR001841 -
Chy12g00786 723 MobiDBLite consensus disorder prediction 697 723 - -
Chy12g00786 723 SMART VWA_4 271 459 IPR002035 -
Chy12g00786 723 CDD RING-H2 81 125 - -
Chy12g00786 723 SUPERFAMILY RING/U-box 78 132 - -
Chy12g00786 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 132 IPR013083 -
Chy12g00786 723 Gene3D von Willebrand factor, type A domain 273 459 IPR036465 -
Chy12g00786 723 SMART ring_2 81 124 IPR001841 -
Chy12g00786 723 Pfam von Willebrand factor type A domain 273 456 IPR002035 -
Chy12g00786 723 PANTHER RETROELEMENT POL POLYPROTEIN-LIKE 4 721 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy11g00820 Chy12g00786 CCT
Chy11g00820 Chy12g00786 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02159 Chy-Chr1:26217928 Chy12g00786 Chy-Chr12:12268962 5.20E-08 dispersed
Chy02g01285 Chy-Chr2:9420671 Chy12g00786 Chy-Chr12:12268962 1.26E-09 dispersed
Chy03g00947 Chy-Chr3:13038356 Chy12g00786 Chy-Chr12:12268962 3.55E-09 transposed
Chy03g00948 Chy-Chr3:13040003 Chy12g00786 Chy-Chr12:12268962 0 transposed
Chy11g00820 Chy-Chr11:11728656 Chy12g00786 Chy-Chr12:12268962 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00786 - - csv:101222940 1375.53