Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00801 ATGGAACATAGTTATGGGTTTGAACAGCATGTTGCTCAACAAAGTCGGCGTGATAAGTTAAGAGTTCCGCAGAATTATTTGCGTGTCGGGGAAGTATCGAGAAATTCTGATGAACAATTGAGTTTTCATAACTCGGAGCATTTGGGTGTTGATTTGGATCTTGTTAGAATTCAAAGTTTTAACAAGGATGCGATTTTGCCTCATGATCACTTGTCTTTGTTACCTTCGGAAATGATAAATTTCTCAAGAGATTCGAACGTTTTATCGCACCAAAGGGATATGATGTTGCGTCAAGAACTGGAAGACCCGGCTCAATGCAGTAGACAAATTGTGACAGATAATAGTATTGATTATTGGAAAAGTTCTCATCAAAGCTGTGATTGGGTGGTGAACTGTGGAAGTAATTCTTTTGGAGGTGAAATGTTGAATCAGGAAGTAACTGATTCTACAGTGTATTCACTGAAGCCAACTTGCATTGGATTCCAAACCTCTTCCTCTTTTAACAATACATCCAACCAGACATTCAATCAAGATGGACAAAAACGTATAGGAGGAGAATTGCATTTGCCTCAAATTTACCAAAATACCCTTCAGGATGTTGTTACATCAGCTTCTATTCGAACTCAGGGTCTTGAGATGACATCCATTGTGCAGCATAATTTTACAGAGATCAACCAAACTGCCGCTTGTGAAGGCAGTGGGAACGAGCTTGCTCTTCTTCCGGTGTACAGGGATCAGCCGAATGTGTTGCCTTATGACAGTACTGGTTCTTGGACGACTGATAGAACTTACTATAATTGCCGCAGTTGGATTGGTGAATTGGGGTCTATTGCTAGAAAAACCGATGAAGAGTTGAGGTCTTTTATGAGTGATTCCAATCCACAAGGTCTAGCCCTGTCGTTGTCTTCGAATCCACCGTTTAAACTGCCCACCACACAGTTTGAAGAATCAGAGGAATTGCAGGAAAGTATAACTGTGTTAAAAAATTCACAAGAATCCAAAACAATCAAATCTGAGAATTTGTGTAAATTACCAAAGCCAACATCTATTGGAACTAAAAATTATGGGAAATCTTTTCAAGATGTGATGGGAGTTCCTGTGAATCCATATAGAAACACAGGTCCTCTTGGCCCCTTTACTGGGTATGCAACTATTTTAAAGAGTTCAAAATTCTTAAAACCTGCCCAACTGCTGTTGGATGAATTTTGTGGCTCAAATGGTCATTATAGGTTTGTCCAACCATGTGAGGTATTTGAGAAAACACCCGGGGAAGTTGGTGTCTCAACGGCTCTTAATGCATTTAGAAATGAGATTGTTAAGGAAAGTAGTTCGTGTGCAGATGCCTCTACATTCTGTGGTTCAAATGAATCAAATGTTAGTGGAGTTGGAAGCATCTCTTCTGATTCTCATCAACCGGAGTATCAGCAAAAGAAAGCAAAACTTCTGTATATGCTTGAGGAGGTTTGCAGAAGATACAAACAATATCATCAACAAATGCAAATGGTAGTGAATTCCTTTGAATCAGTAGCTGGTCTTAGTTCTGCAACGCCCTACATTTCCCTCGCGCTCAAGACAGTCTCAAGACACTTCCGGTCTCTAAAGAATGCCATCTCTGAACAACTGAAGTATCTGAGGAAGGTACTTGGTGAGGATTTGTCATCTCCTTCTGCTGGGACGAGCGGCAGCAAAGGCGATGCAAATTCAGCTAGGTTGAAATACATAGAACAGAGCTTCCAAAAGCAAAAATCTGGCATTGTCAATATTGGATTCCTCGAATCCCAAAATGCATGGAGGCCACAGAGAGGTTTGCCTGAACGTGCTGTAGCGATTCTTAGAGCATGGCTCTTCGAGCATTTTCTTCACCCATACCCCACAGACACAGATAAACACATGTTGGCCACTCAAACAGGCCTATCTCGAAACCAGGTGTCGAATTGGTTCATAAATGCTCGAGTGCGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGAAGAAACGAACAACAAAAGCCATGGTACGAGAGATGGAAGTTCTACATTAGAAAACACAGCCGGTTGGACCAGTAACGAACACCAGCCTCTAAAAAACCAGGGTGTTGCAAATGAAATGTCTACTCATCATTTGCAGTGCTTTGGGGTAGATTCCACTAGTGGCGACCAAAATGGACTCGGCAGCAACGCCCAACAATGGGATCAAGGCAAACAATCAAAATTGAACAATGGGATTCAGTCCAGCATGGAAAGGGAACTGATGGGGTTCATGCCATATCAGGCCAGTGCAGCCGAGGTTGGAGGACTCGGAGCTGTCTCTCTAACATTAGGCCTTCGCCACAGAGTCGAGAGTGCACACCATCAACAGCAACGACATCAATTACAGCAACAAGATGACCAACTAATTCGCCACTATGGAAGCGAAATGATCCATGATTTTGTGGGGTAA 2460 42.36 MEHSYGFEQHVAQQSRRDKLRVPQNYLRVGEVSRNSDEQLSFHNSEHLGVDLDLVRIQSFNKDAILPHDHLSLLPSEMINFSRDSNVLSHQRDMMLRQELEDPAQCSRQIVTDNSIDYWKSSHQSCDWVVNCGSNSFGGEMLNQEVTDSTVYSLKPTCIGFQTSSSFNNTSNQTFNQDGQKRIGGELHLPQIYQNTLQDVVTSASIRTQGLEMTSIVQHNFTEINQTAACEGSGNELALLPVYRDQPNVLPYDSTGSWTTDRTYYNCRSWIGELGSIARKTDEELRSFMSDSNPQGLALSLSSNPPFKLPTTQFEESEELQESITVLKNSQESKTIKSENLCKLPKPTSIGTKNYGKSFQDVMGVPVNPYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSNGHYRFVQPCEVFEKTPGEVGVSTALNAFRNEIVKESSSCADASTFCGSNESNVSGVGSISSDSHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVNSFESVAGLSSATPYISLALKTVSRHFRSLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGDANSARLKYIEQSFQKQKSGIVNIGFLESQNAWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMEETNNKSHGTRDGSSTLENTAGWTSNEHQPLKNQGVANEMSTHHLQCFGVDSTSGDQNGLGSNAQQWDQGKQSKLNNGIQSSMERELMGFMPYQASAAEVGGLGAVSLTLGLRHRVESAHHQQQRHQLQQQDDQLIRHYGSEMIHDFVG* 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12810356 12814068 - Chy12G214010.1 Chy12g00801 238582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00801 819 MobiDBLite consensus disorder prediction 672 697 - -
Chy12g00801 819 ProSiteProfiles 'Homeobox' domain profile. 594 657 IPR001356 GO:0003677
Chy12g00801 819 Pfam Homeobox KN domain 614 653 IPR008422 GO:0003677|GO:0006355
Chy12g00801 819 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 35 786 - -
Chy12g00801 819 Pfam Associated with HOX 385 538 IPR006563 -
Chy12g00801 819 SMART HOX_1 597 661 IPR001356 GO:0003677
Chy12g00801 819 SUPERFAMILY Homeodomain-like 598 663 IPR009057 -
Chy12g00801 819 Gene3D - 600 662 - -
Chy12g00801 819 MobiDBLite consensus disorder prediction 679 697 - -
Chy12g00801 819 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 786 - -
Chy12g00801 819 SMART prehox3 380 539 IPR006563 -
Chy12g00801 819 CDD homeodomain 597 658 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02186 Chy-Chr4:26875456 Chy12g00801 Chy-Chr12:12810356 8.69E-77 dispersed
Chy08g00703 Chy-Chr8:14879184 Chy12g00801 Chy-Chr12:12810356 4.01E-68 dispersed
Chy11g00154 Chy-Chr11:1548961 Chy12g00801 Chy-Chr12:12810356 1.95E-53 dispersed
Chy11g00350 Chy-Chr11:3195879 Chy12g00801 Chy-Chr12:12810356 3.69E-72 dispersed
Chy12g00801 Chy-Chr12:12810356 Chy04g01857 Chy-Chr4:24758171 8.10E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18854 PF07526 POX 3.80E-42 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00801 - - csv:101214235 1571.6