Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00809 ATGGAATCGGAAAAGCTCTTAATTTCACGAGGAAACCCTAGAAATTCTGTTTACCCATCTGACCGCCCAATCCCCACCACCAGCGGCAGGACTATGCCCAATGAGTTGCCACAAAAGCCTGCCCCTTCCATAGCTCACCGGTTTAGAGCCCAGCTAAAGCAGCGGGATGATGAATTTAGGGTTTCTGGCCATGATGTTGTGCCCCCTCCTACCGCTGAGGATATTGTGCAGTTGTATGACCTCATGTTGTCGGAGCTCACTTTTAATTCGAAGCCCATCATTACGGATCTCACAGTTCTTGCTGATGAGCAGAGAGAACATGGGAAGGGCATTGCCGACTTAATTTGTGCGCGGATTCTGGAGGTTCCAGTTGACCAAAAACTTCCTTCATTATATCTATTAGACAGCATCGTTAAGAATGTTGGGCACGAGTACATCAGTTATTTCTCGTCTCGTTTACCTGAGGTGTTTTGCGAGGCTTACAGGCAAGTTCATCCTAATTTGCACAATGCAATGCGCCACCTCTTTGGGACTTGGGCAACTGTGTTTCCACCATCCATCATTCGGAAGATCGAAGCTCAACTTTCTCAGTTAACAGCACAAGAGTCATCAGGTTTGACATCCTCAAGGGCTTCTGAATCTCCTCGGCCAACTCATGGTATTCATGTCAATCCAAAATACTTGCGCCAGCTGGAACACTCAGTGGTGGATAAACATAGCCAAGATTCAAGAGGGACCTCAGCTATAAAAGTTCATGATAAAAAGCTTGCTTCTGGATATGAAGAGTATGACTACGATCATGCGGATGCTCTTGAACATGGTGGAGCTCAAGGATTTCATTCAATGGGAAGCATGGGCCATGATTCTTTTTCCCTTGGAACAAATACAGCAAATATAAAGCTAGCAAAATCATCTCTGTCTTCAAGAATTGGACCCCATAGACCTCTACAATCAGTTGGTGATGAACTTGAATTGGTCAGAGCCTCACCCTCACAGAATGTATATGATTATGAAGGTTCGAAAATGATTGATAGAAATGAGGATACCAATAAATGGAGGAGAAAGCAATATCCTGACGATAATCTGAATGGACTTGACAGTACTTCTTCATATAATATTAGAAATGGGCATGCACTTGAGGGACCAAGAGCTTTAATCGAAGCATACGGAAGTGATAAAGGAAAAGGTTATTTAAACGACAATCCACCTCAAGCTGAACATTTTTCTATAAATGGTATAGACAAGGCAACTCCAGTAACATGGCAGAACACTGAAGAAGAAGAGTTTGATTGGGAAGATATGAGCCCCACATTAGCTGATAGAGGCCGAAATAATGATATGTTGAAACCACCTGTCCCACCTTCAAGATTTAGGACAAGATCAGGATTTGAAAGATCAAATCCTATGCCTATAGAGCCAGGAATGAGAAGCAATTGGTCTAGTCAGGTTCAGCTACCGGGTATTGATTCCTCCATAGTTATTGAAGATGTGGCCCATTCAACACCTGATATTTGGAATATGCACAATCACATTTCTCAGACATCTCAGAACCTCATGAACAATAAAGGACCGGGAAGAAATTTCCAGATGCCTATGTTGGGGAGAGGCATAACTTCCTCTGTTGGTGAGAAAATGTCTCCTTATGGTGACAAGCTTTTGACCAATGATGCTTTACATAGGCCCACTAACATTGCTTCGAGATTGGGTTCTTCTGGTCTTGATTCTAGCATGGAGTCGCAATCAATTGTACAATCTATGGGCCCAAGGCATCCTCTGAATCTTTCTAACTCTTGCCCACCCTCTAGACCTCCAATTTTTCCTGTACCAAGACACAATACAAGTCAGTTTGAGTCTTTAAATGGTAGCAATTCTTTCATGAATTGTGCAAATAGGACTTTTTTGCCTGAGCAGCAGATGAATAACTTGAGAAATAAGGAGCTAAGTCTTACAACTAAGTCGCCACAAGTTGGCAACCAACATACTGGGCATATTCCTTTAACTCGGGGAAACCAATTGCAGGGCATGCCTTTAAAACCGCAATTTCTACCATCTCAGGACATGCAAGATAATTTTAGTGGATCAGCAGTACCTCCAGTGTTACCACATTTAATGGCACCATCTTTGAGTCAAGGATACATTTCACAAGGACATCGCCCTGCTATTAGTGAGGGTTTGTCAAGTTCTGCCCCTATTGGACAATGGAATTTGTCTGTTCATAATAGCTCCAGTAACCCTTTGCATTTACAAGGAGGGCCGCTGCCACCTCTTCCACCTGGGCCTCATCCTACTTCTGGTCCGACTATACCTATCTCTCAAAAGGTTCCTGGACAGCAACCGGGAACTGCAATTTCTGGGCTAATAAGTTCTCTCATGGCCCGGGGTTTAATCTCATTAAACAATCAAGCTTCTGTACAGGATTCTGTTGGGTTAGAATTCAATCCAGATGTACTCAAGGTGCGACATGAATCTGCAATCACTGCTCTATATGCTGATCTTCCTCGACAATGCATGACCTGTGGTCTTCGATTCAAGACCCAGGAAGAGCATAGTAATCATATGGATTGGCATGTCACTAAAAATCGTATGTCGAAAAGTAGGAAGCAAAAGCCTTCTCGCAAATGGTTTGTAAGTATTAGCATGTGGCTTAGCGGTGCAGAGGCTTTAGGAACGGAGGCAGTTCCAGGATTTTTGCCTGCTGAGGTCGTTGTAGAGAAAAAAGATGATGAAGAACTGGCTGTTCCTGCTGACGAGGATCAGAAGACATGTGCATTATGTGGAGAACCTTTCGAGGATTTTTACAGTGATGAAACAGAGGAGTGGATGTATCGGGGTGCTGTCTACATGAATGCACCTGATGGACAAACAGCCGGCATGGATAGATCTCAGTTAGGGCCCATAGTGCATGCTAAATGCAGGACCGAAACTAATGTGGTTCCCTCTGAAAGTTTTGACCAAGATGAAGGGGGAGTTAGTGAAGAGGGTAATCGAAGAAAACGATTGCGGAGCTAG 3009 43.67 MESEKLLISRGNPRNSVYPSDRPIPTTSGRTMPNELPQKPAPSIAHRFRAQLKQRDDEFRVSGHDVVPPPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARILEVPVDQKLPSLYLLDSIVKNVGHEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWATVFPPSIIRKIEAQLSQLTAQESSGLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDKHSQDSRGTSAIKVHDKKLASGYEEYDYDHADALEHGGAQGFHSMGSMGHDSFSLGTNTANIKLAKSSLSSRIGPHRPLQSVGDELELVRASPSQNVYDYEGSKMIDRNEDTNKWRRKQYPDDNLNGLDSTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSINGIDKATPVTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPPVPPSRFRTRSGFERSNPMPIEPGMRSNWSSQVQLPGIDSSIVIEDVAHSTPDIWNMHNHISQTSQNLMNNKGPGRNFQMPMLGRGITSSVGEKMSPYGDKLLTNDALHRPTNIASRLGSSGLDSSMESQSIVQSMGPRHPLNLSNSCPPSRPPIFPVPRHNTSQFESLNGSNSFMNCANRTFLPEQQMNNLRNKELSLTTKSPQVGNQHTGHIPLTRGNQLQGMPLKPQFLPSQDMQDNFSGSAVPPVLPHLMAPSLSQGYISQGHRPAISEGLSSSAPIGQWNLSVHNSSSNPLHLQGGPLPPLPPGPHPTSGPTIPISQKVPGQQPGTAISGLISSLMARGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPRQCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAVPGFLPAEVVVEKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGQTAGMDRSQLGPIVHAKCRTETNVVPSESFDQDEGGVSEEGNRRKRLRS* 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13126431 13133237 + Chy12G214090.1 Chy12g00809 238590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00809 1002 MobiDBLite consensus disorder prediction 1 40 - -
Chy12g00809 1002 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 38 977 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Chy12g00809 1002 SUPERFAMILY ENTH/VHS domain 71 199 IPR008942 -
Chy12g00809 1002 Gene3D - 69 197 IPR008942 -
Chy12g00809 1002 MobiDBLite consensus disorder prediction 974 1002 - -
Chy12g00809 1002 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 38 977 - -
Chy12g00809 1002 SMART 558neu5 74 196 IPR006569 -
Chy12g00809 1002 Pfam CID domain 83 190 IPR006569 -
Chy12g00809 1002 ProSiteProfiles CID domain profile. 71 199 IPR006569 -
Chy12g00809 1002 MobiDBLite consensus disorder prediction 742 763 - -
Chy12g00809 1002 MobiDBLite consensus disorder prediction 9 34 - -
Chy12g00809 1002 MobiDBLite consensus disorder prediction 202 222 - -
Chy12g00809 1002 CDD CID_Pcf11 76 195 - -
Chy12g00809 1002 ProSitePatterns Zinc finger C2H2 type domain signature. 836 856 IPR013087 -
Chy12g00809 1002 MobiDBLite consensus disorder prediction 436 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01967 Chy-Chr4:25566103 Chy12g00809 Chy-Chr12:13126431 1.25E-33 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18856 PF04818 CID 3.00E-11 CL0020 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00809 K14400 - csv:101206311 1948.71