Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00816 ATGGAGAAATCTGGGTATGGTCGCGATGGAATTTTCAGGTCTTTACGGCCTCCGCTTGTCTTTCCTAAAGATCCCAATCTCTCCATGATCTCTTTCCTCTTCCGAAATTTATTGTCTTATCCAAATAGACTAGCCATTGTTGATGCGGAATCTTCAAATTCTGTGTCGTATTCCCAGCTTAAAGCCTTGGCAATTAGGGTATCCAATAATTTGATCCAATTGGGTATTGAGAAAAATGACGTGGTGTTGATTTTTGCTCCAAATTCAGTTCAATTCACCATTTGTTTCATTGGGGTTATTGCCGTTGGGGCTATTGTAACTACTTGTAATCCTGTATACACGGTTTCTGAGCTAACTAAGCAAGTTAGAGATGCTAAACCTAAACTCGTGATATCTGTTGCTGAATTGTGGGATAAAGTGAAGGATCTAAACATCCCAACTGTGTTACTAGACCAGCAAATTCCTTCAGCAATTCATTCTTCTAAAATATTGTGTTTCAATGATTTGGTGAACATGGCTGGTGATAAATCTGGGTCTGAGTTTCCAATTGTTGGGGTGAAGCAGAGTGATACAGCTGCACTTTTGTATTCATCAGGAACAACAGGAGCTAGTAAGGGTGTGATTTTGACTCACCGAAACTTCATAGCATCTTCTTTGATGATAACAATGGATCAGACGTTTAATGGAGAGGAACATGGCGTATTTCTGAACTTCTTGCCAATGTTTCATGTGTTTGGATTGGCTTGTATAACATATGCTCAACTGCAGAAAGGAAACACCATTGTCTCTATGCCAAAGTTTAATCTTGAGAAAGCCTTGTGGGCAGTGGAGAAGTACAAGGTGACAGATCTGTGGGTTGTGCCGCCTGTTGTGCTTGCTTTGGCGAAGCAGAGTCTGGTGAAGAAATACAACCTTTCATCCGTGAAGCATGTCGGTTCAGGGGCTGCACCTCTTGGGAGGGAATTAATGGAGGAATGTGCTAATAACATTCCCAGTGCTGTGGTTATCCAGGGTTATGGTATGACTGAGACTTGTGGAGTTGTTGCTTTGGAGAATCCAGCAGTTGGCAAACGAAATTCTGGTTCAGCTGGAACACTTGCCTCTGGTGTTGAGGCTAAAATAGTCAGTGTAGATACTCTAAACCCTCTACCTCCTAATCAATATGGAGAGATACATGTTCGAGGACCAAACATGATGCTCGGTTATTTCAACAATCCAGAAGCCACTAAGCAAACTATTGATAAACATGGATGGGTGCATACTGGAGACCTTGGATACTTCGATGAAAACGGTGAGCTTTATGTTGTCGACCGAATCAAGGAACTCATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAGCTTGAAGCACTGCTGGTTTCTCACCCTGAGATACTAGATGCTGTTGTCATCCCCTGCCCTGATGAAGAAGCTGGAGAAGTTCCAATTGCTTATGTTGTTCGATCTGCCAATGGTTCTTTGACTGAAGAGGACATCCTTAAATTCATTGCTGATCAGGTTTCTCCTTATAAAAGGTTAAGAAGAGTGACATTCATCAGCAGTGTCCCCAAGTCTGTTTCTGGTAAAATTCTGAGGAGAGAACTCATCGAGAAAGTAAGAGCTAAAATCTAA 1632 41.97 MEKSGYGRDGIFRSLRPPLVFPKDPNLSMISFLFRNLLSYPNRLAIVDAESSNSVSYSQLKALAIRVSNNLIQLGIEKNDVVLIFAPNSVQFTICFIGVIAVGAIVTTCNPVYTVSELTKQVRDAKPKLVISVAELWDKVKDLNIPTVLLDQQIPSAIHSSKILCFNDLVNMAGDKSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHRNFIASSLMITMDQTFNGEEHGVFLNFLPMFHVFGLACITYAQLQKGNTIVSMPKFNLEKALWAVEKYKVTDLWVVPPVVLALAKQSLVKKYNLSSVKHVGSGAAPLGRELMEECANNIPSAVVIQGYGMTETCGVVALENPAVGKRNSGSAGTLASGVEAKIVSVDTLNPLPPNQYGEIHVRGPNMMLGYFNNPEATKQTIDKHGWVHTGDLGYFDENGELYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPCPDEEAGEVPIAYVVRSANGSLTEEDILKFIADQVSPYKRLRRVTFISSVPKSVSGKILRRELIEKVRAKI* 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13246391 13249151 + Chy12G214160.1 Chy12g00816 238597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00816 543 SUPERFAMILY Acetyl-CoA synthetase-like 17 541 - -
Chy12g00816 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Chy12g00816 543 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 542 - -
Chy12g00816 543 CDD 4CL 21 535 - -
Chy12g00816 543 Gene3D - 441 542 IPR045851 -
Chy12g00816 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 542 - -
Chy12g00816 543 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Chy12g00816 543 Pfam AMP-binding enzyme 38 445 IPR000873 -
Chy12g00816 543 Gene3D - 10 440 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00087 Chy-Chr2:558202 Chy12g00816 Chy-Chr12:13246391 3.34E-38 dispersed
Chy04g02042 Chy-Chr4:26006671 Chy12g00816 Chy-Chr12:13246391 0 dispersed
Chy10g00774 Chy-Chr10:13818401 Chy12g00816 Chy-Chr12:13246391 9.65E-132 dispersed
Chy10g01278 Chy-Chr10:17318922 Chy12g00816 Chy-Chr12:13246391 1.41E-141 dispersed
Chy12g00816 Chy-Chr12:13246391 Chy12g01184 Chy-Chr12:16667488 1.11E-134 dispersed
Chy12g01185 Chy-Chr12:16671727 Chy12g00816 Chy-Chr12:13246391 2.14E-138 dispersed
Chy12g00816 Chy-Chr12:13246391 Chy04g01325 Chy-Chr4:19794468 9.81E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00816 K01904 - csv:101220141 1038.87