Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00827 ATGGGTGATGTTGAAGGTTCTCCAGGAAGCTCAATGCATGGAGTGACTGGAAGAGAACAAACCTTTGCATTCTCTGTAGCTTCCCCAATCGTCCCAACTGACACCACGGCTAAATTTGCATTACCGGTCGACTCGGAGCATAAATCTAAGGTTTTCAGGATATGGTCTCTAGCCAACCCCCACATGAGAACCTTTCACCTTTCTTGGATTTCCTTCTTCACATGCTTTGTGTCCACCTTCGCAGCCGCCCCTCTCGTCCCCATCATTCGCGACAACCTGAACCTGACGAAAGTCGACATTGGGAACGCTGGAGTTACATCTGTTTCTGGAAGTATCTTCTCTCGTCTTGTGATGGGGGCTGTGTGTGACCTTCTCGGACCACGCTATGGATGTGCGTTTTTGATAATGTTGTCTGCTCCGACGGTGTTTTGTATGTCGTTTGTGTCGAATGCTGCTGGTTACATAACAGTTAGATTCATGATAGGGTTTTCGCTAGCGACGTTCGTGTCGTGTCAGTATTGGATGAGTACAATGTTTAATAGTAAGATAATAGGGCTTGTGAACGGGACAGCAGCTGGGTGGGGGAATATGGGAGGAGGAGCAACTCAATTAATAATGCCATTGTTGTACGATGTTATTCAGAGAGCTGGTGCTACTCCTTTTACTGCTTGGAGGATCGCTTTCTTCATTCCTGGTTTCCTTCATGTTCTTATGGGCATTTTGGTTTTGACTCTTGGTCAAGACTTGCCTGATGGTAACCTTGCTAGTCTTCAGAAGAAGGGAAACGTTGCCAAAGACAAATTCTCCAATGTCTTGTGGTATGCTGTGACCAATTACCGAACTTGGATCTTCGTCCTCCTCTATGGCTACTCCATGGGGGTCGAGCTTTCCACCGATAACGTCATTGCCGAATATTTCTACGATAGGTTCGATCTAAAGCTTCACACAGCGGGAATCATTGCAGCAACGTTCGGGATGGCAAATCTAGTGGCTAGACCGTTCGGAGGGTATGCGTCTGACGTAGCAGCGCGATACTTCGGGATGAGAGGAAGGTTGTGGACACTATGGATCCTACAAACATGTGGGGGAGTGTTTTGCATGTGGCTGGGGAAAGCAACCAAGTTGCCAATAGCAATAGTGGCAATGATATTGTTCTCAATAGGAGCACAAGCAGCATGTGGAGCAACATTTGGTATAATTCCATTCATATCAAGGAGATCTTTGGGAATAATATCAGGACTAACAGGAGCTGGTGGGAACTTTGGAAGTGGTTTAACACAATTAGTATTCTTCTCAACAACAAAATACTCAACAGACACCGGATTGTTCTTGATGGGAATAATGATTGTTTGTTGCACTCTTCCAGTAACTTTGGTTCATTTCCCTCAATGGGGAAGCATGTTTCTACCACCAACTAAACATGTTGAAAAATCAACTGAAGAATTTTATTATGGTTCTGAATGGACTGAGGATGAAAAGAAGAAAGGTTTGCATCAACAAAGTATTAAGTTTGCTGAGAATAGCAGATCTGAACGTGGTAGACGTGTTGCTTCAGCTCCAACTCCACCAAATACAACTCCTTCTCATGTTTAA 1593 44.7 MGDVEGSPGSSMHGVTGREQTFAFSVASPIVPTDTTAKFALPVDSEHKSKVFRIWSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSNAAGYITVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLLYDVIQRAGATPFTAWRIAFFIPGFLHVLMGILVLTLGQDLPDGNLASLQKKGNVAKDKFSNVLWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLHTAGIIAATFGMANLVARPFGGYASDVAARYFGMRGRLWTLWILQTCGGVFCMWLGKATKLPIAIVAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTTKYSTDTGLFLMGIMIVCCTLPVTLVHFPQWGSMFLPPTKHVEKSTEEFYYGSEWTEDEKKKGLHQQSIKFAENSRSERGRRVASAPTPPNTTPSHV* 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13493944 13495777 + Chy12G214270.1 Chy12g00827 238608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00827 530 Gene3D MFS general substrate transporter like domains 58 254 IPR036259 -
Chy12g00827 530 Gene3D MFS general substrate transporter like domains 264 466 IPR036259 -
Chy12g00827 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Chy12g00827 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Chy12g00827 530 SUPERFAMILY MFS general substrate transporter 57 460 IPR036259 -
Chy12g00827 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Chy12g00827 530 MobiDBLite consensus disorder prediction 490 513 - -
Chy12g00827 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 527 IPR044772 GO:0015112
Chy12g00827 530 MobiDBLite consensus disorder prediction 490 530 - -
Chy12g00827 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 527 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00884 Chy-Chr10:14633896 Chy12g00827 Chy-Chr12:13493944 0 dispersed
Chy12g00827 Chy-Chr12:13493944 Chy12g00828 Chy-Chr12:13502799 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00827 K02575 - csv:101218006 1056.2