Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00863 ATGGAGAAAAGGGAAGAAACAAATACGGCGTCGGCGGCGGCGGTGGTGGTGGTGGGTAGTTTTTCCCCGTGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGATAATTGTGAATTAGGGCCCTATTTTCCTTCAAAGGAACCTCTCAAATTCACTATTGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGATCTTCCTAAATCGCAAAGAGCAGATGCTGTGAACAGTATGGTGTATGAAGCAGGTGCAAGAATAAGAGATCCAATTTATGGATGTGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTTTAAGGAGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGGTCAAATGCCACAACCACCAATGCATGATCATCAATCACTAAACGACCATTACAACGTTGCTAGCCCTCAAAGTTATCTCTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCCTATGGACTTGA 558 43.73 MEKREETNTASAAAVVVVGSFSPCAACKILRRRCRDNCELGPYFPSKEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVNSMVYEAGARIRDPIYGCAGSIFHLQRQINDL*GELAKAQAEVLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDHYNVASPQSYLSYSYLFEECNVLEPLWT* 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13864557 13865350 + Chy12G214630.1 Chy12g00863 238644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00863 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 15 183 - -
Chy12g00863 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 15 183 - -
Chy12g00863 184 Pfam Lateral organ boundaries (LOB) domain 23 114 IPR004883 -
Chy12g00863 184 ProSiteProfiles LOB domain profile. 22 123 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy11g01314 Chy12g00863 CCT
Chy11g01314 Chy12g00863 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00333 Chy-Chr10:8489242 Chy12g00863 Chy-Chr12:13864557 8.70E-41 dispersed
Chy11g01024 Chy-Chr11:14506810 Chy12g00863 Chy-Chr12:13864557 1.68E-46 dispersed
Chy12g00766 Chy-Chr12:11758250 Chy12g00863 Chy-Chr12:13864557 2.11E-08 dispersed
Chy12g00863 Chy-Chr12:13864557 Chy12g01247 Chy-Chr12:17109983 4.59E-35 dispersed
Chy12g00861 Chy-Chr12:13837624 Chy12g00863 Chy-Chr12:13864557 3.05E-42 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18859 PF03195 LOB 4.00E-36 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00863 - - csv:101222021 326.635