Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00891 ATGGGTTGTTTTCGTTGTACCGGTTCATCCAGCAAGAAATCGGAGGATATCGAACAAAAAGACCCCAATACTTTCAATTCCAAAACCCATAAGCCCGATGATCGAACCCCTTCAGATAAAGCCAAAGTTATTTCAAATTTGGTGAAGAGGGATTCTGATGTGAAGGTGGTTGTGTCTAAAAATGACCAATTGGCTTTAGATGTAAAGAAATTGAATTTGAAAGATGAGGTTTCTGAGGAAGGAGAAGCCAATGGCCGTGCTAAGACGTTTACATTTGAAGAACTTGCAGCCGCGACGGGCAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTACAAGGGGTACTTGGAAAAAGTTAATGAGGTTGTAGCAATTAAACAGCTTGACCGCAATGGACTTCAAGGAATTCGAGAGTTTGTTGTGGAAGTTTTGACTTTAAGTCTAGCTGATCATCCAAACCTTGTAAAACTTATTGGCTTTTGTGCTGAAGGGGATCAGAGATTATTGGTTTATGAATATATGCCATTGGGATCATTGGAAAACCATTTACACGATCTTCGACCTGGTGCCAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCGAGGGGGTTGGAGTATTTGCATGAGAAGATGAAGCCCCCGGTTATATATCGTGATTTGAAATGCTCAAACATTTTACTCGGTGAAGGATATCATCCAAAGCTATCTGATTTTGGATTGGCTAAAGTAGGTCCTAGTGGGGATAAAACCCACGTTTCAACCAGGGTTATGGGCACATATGGGTATTGCGCTCCAGATTATGCAATGACAGGCCAGCTGACATTCAAATCAGATATTTACAGCTTTGGCGTTGTTTTATTGGAACTCATCACGGGCAGGAAAGCAATCGATCATTCAAAACCTCATTCGGAGCAAAATCTTGTGGCTTGGGCGCGACCCTTGTTCCGAGACCGAAAGAAGTTCTCACAAATGGTTGATCCAATGCTCCAAGGACATTATCCTGTGAGAGGATTATACCAATCTCTAGCCATAGCCGCCATGTGTGTCCAGGAGCAACCGAATATGCGACCAGTCATAACTGATGTTGTAACAGCTTTAAACTACCTAGCGTCCCAGAAATACGATCCCCAGACTCAACCAAACCAAAACTCCCAAAAGAGACCATCTTCTCATAAAATGGAACGGAGTGATGATAAGAATGAAACTTCAGACAACGATGAGTCAGAGAGAGAGTGA 1266 42.42 MGCFRCTGSSSKKSEDIEQKDPNTFNSKTHKPDDRTPSDKAKVISNLVKRDSDVKVVVSKNDQLALDVKKLNLKDEVSEEGEANGRAKTFTFEELAAATGNFRSDCFLGEGGFGKVYKGYLEKVNEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGAKVIDWNTRMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMVDPMLQGHYPVRGLYQSLAIAAMCVQEQPNMRPVITDVVTALNYLASQKYDPQTQPNQNSQKRPSSHKMERSDDKNETSDNDESERE* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14274954 14277604 - Chy12G214910.1 Chy12g00891 238672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00891 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Chy12g00891 421 MobiDBLite consensus disorder prediction 398 421 - -
Chy12g00891 421 CDD STKc_IRAK 108 377 - -
Chy12g00891 421 MobiDBLite consensus disorder prediction 1 40 - -
Chy12g00891 421 SMART serkin_6 102 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00891 421 MobiDBLite consensus disorder prediction 11 40 - -
Chy12g00891 421 MobiDBLite consensus disorder prediction 383 421 - -
Chy12g00891 421 PANTHER OS07G0668900 PROTEIN 1 410 - -
Chy12g00891 421 SUPERFAMILY Protein kinase-like (PK-like) 88 400 IPR011009 -
Chy12g00891 421 MobiDBLite consensus disorder prediction 383 397 - -
Chy12g00891 421 Pfam Protein kinase domain 107 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00891 421 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 410 - -
Chy12g00891 421 Gene3D Transferase(Phosphotransferase) domain 1 179 408 - -
Chy12g00891 421 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Chy12g00891 421 ProSiteProfiles Protein kinase domain profile. 102 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00891 421 Gene3D Phosphorylase Kinase; domain 1 70 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02100 Chy-Chr4:26381217 Chy12g00891 Chy-Chr12:14274954 0 dispersed
Chy11g01290 Chy-Chr11:19071984 Chy12g00891 Chy-Chr12:14274954 0 dispersed
Chy11g01816 Chy-Chr11:24519828 Chy12g00891 Chy-Chr12:14274954 2.34E-179 dispersed
Chy12g00891 Chy-Chr12:14274954 Chy09g00267 Chy-Chr9:2226466 1.73E-117 dispersed
Chy12g00891 Chy-Chr12:14274954 Chy10g00613 Chy-Chr10:12711144 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71615 PF00069 Pkinase 5.20E-44 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00891 - - csv:101215066 833.558