Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00894 ATGGAGAATGATTCTTCTTCCGCCATGGATATCAAAGGAACTCCCACTTACGACTCCAAATACTTACTCTACAATGTTCTTGGCAACTTCTTCGAGGTCTCCGCCAAATACTCCCCTTCAATTCAACCTGTTGGACGTGGTGCTTACGGCATTGTTTGTTGCACGACTAATTCCGAGACAAAAGAAGAGGTTGCGATTAAGAAGATTGGGAATGCTTTTGATAATAGGATTGATGCTAAGAGGACGCTTCGTGAGATTAAACTGCTTTGCCATATGGATCATGACAATATTATAAAAATCAAAGATATTATTCCACCTCCAGATAAGGAGAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGACCTACACCAGATCATTCGCTCTTCCCAGGCTTTGACAGACGATCACTGTCAGGTAATGGATACTTATCATGCTATCACTGAGTACTTCTTATACCAATTACTGCGAGGTTTGAAGTATTTACATTCTGCAAATGTCTTGCACCGAGATCTTAAACCAAGCAACCTGCTCCTTAATGCAAATTGTGACCTCAAGATTTGTGACTTTGGGTTAGCAAGAACAACATCAGAGACAGATTTTATGACGGAATATGTTGTAACACGATGGTATCGAGCCCCTGAGCTACTACTCAACACTTCTGAATACACTGCAGCGATAGATATTTGGTCTGTTGGATGTATTCTCATGGAAATTCTTAGGAGGGAGCCACTGTTCCCTGGTAAAGACTATGTGCAGCAATTGGGGCTTATAACTGAGTTGCTAGGTTCACCTGATGATTCAGATCTCGGGTTTCTTAGAAGTGATAACGCAAGGAAGTATGTTAAGCAACTTCCTCATTTCCCAAAACAACCGCTGATCGAAAAGTTCCCAGATCTTCCTCCACTGGCAGTTGATCTTGCAGAGAGGATGCTACTCTTTGATCCAAGCAAGAGAATAACTGTCGAGGAGGCCATGAATCACCCATATATAGTAAGTCTTCATGAGATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTTGAACAGGCATCCTTGGATGAAGAAGACATAAAAGAACTTATATGGATGGAGTCTATCAAGTTCAATCCAAATCACATTTAG 1143 40.86 MENDSSSAMDIKGTPTYDSKYLLYNVLGNFFEVSAKYSPSIQPVGRGAYGIVCCTTNSETKEEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNIIKIKDIIPPPDKEKFNDVYIVYELMDTDLHQIIRSSQALTDDHCQVMDTYHAITEYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDSDLGFLRSDNARKYVKQLPHFPKQPLIEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMNHPYIVSLHEINEEPTCPSPFNFDFEQASLDEEDIKELIWMESIKFNPNHI* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14319652 14322471 - Chy12G214940.1 Chy12g00894 238675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00894 380 Gene3D Transferase(Phosphotransferase) domain 1 122 361 - -
Chy12g00894 380 Gene3D Phosphorylase Kinase; domain 1 21 371 - -
Chy12g00894 380 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 17 379 - -
Chy12g00894 380 Pfam Protein kinase domain 41 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00894 380 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524
Chy12g00894 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Chy12g00894 380 ProSiteProfiles Protein kinase domain profile. 38 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00894 380 SMART serkin_6 38 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00894 380 SUPERFAMILY Protein kinase-like (PK-like) 41 340 IPR011009 -
Chy12g00894 380 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 17 379 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01256 Chy-Chr9:14581312 Chy12g00894 Chy-Chr12:14319652 0 dispersed
Chy12g00122 Chy-Chr12:1329932 Chy12g00894 Chy-Chr12:14319652 8.94E-151 dispersed
Chy12g00894 Chy-Chr12:14319652 Chy11g01438 Chy-Chr11:21183907 1.42E-109 dispersed
Chy12g00894 Chy-Chr12:14319652 Chy11g01662 Chy-Chr11:23088308 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71616 PF00069 Pkinase 1.90E-66 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00894 K04371 - csv:101218403 735.717