Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00907 ATGCTTCTCCAACCACTTTTTCTTCTCTTCTTCTTCTTCACCTTCTTCTCTAACCCTTCTCTTCTTTCCTTCTCTCTAACCCAAGAAGGCCTCTATCTCCACACCATCAAGCTTTCTCTCGACGACCCAGATTCCGCTCTCCACTCATGGAACGACCGCGACGATACTCCCTGTTCCTGGTTCGGCGTCTCTTGCGACCCACAAACCAACTCCGTCCACTCTCTCGACCTCTCCAACACTAACATCGCTGGCCCATTTCCTTCCCTTCTTTGCCGCCTCCAGAATCTTTCATTCCTCTCCCTTTACAACAATTCCATCAACATGTCCATTCCCTCTGTTATTTCAACCTGTACCAGTCTCCACCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGAGCTTCCGGCCTCGATTTCTGATCTCCCCAACCTTCGTTACTTGGATTTGACTGGGAATAACTTCTCCGGCGACATTCCGGAGAGTTTCGCTCGGTTTCAGAAGTTGGAAGTTCTGTCTCTTGTTTATAATCTTCTTGATGGGCCTATGCCGGCGTTTCTCGGCAACATTACGTCGTTGAAGATGTTGAACCTGTCTTATAACCCTTTCGAGCCCAGTCGGATCCCGCCGGAGTTTGGGAATTTGATGAATCTTGAGGTGCTCTGGCTTACTCAGTGTAATTTGGTTGGGGAAATTCCGGAGTCTCTCGGTCGGTTGAAGCGGCTCACTGATTTGGACTTGGCATTTAATAATCTTGATGGATCGATTCCGAAGTCGCTCATGGAGTTGACTAGTGTGGTTCAAATTGAGTTGTATAATAACTCGTTAACAGGAGAGTTGCCTTCTGGGTTTTCGAATCTGACTTCATTGCGACTGTTTGACGCTTCGATGAATGGTTTGACTGGGGTGATTCCGGATGAGTTGTGTCAATTGCCGCTTGAGAGTCTCAATCTCTACGAGAACAAGTTTGAAGGGAAGTTACCGGAAAGCATTGCCAACTCCCCGGGTCTGTACGAACTCAGACTGTTCAGTAACCGGCTCACCGGTGAGTTACCGTCAAATCTTGGAAAGAACTCGCCAATGAGATGGATTGATGTTTCTAACAACCAGTTTAAGGGTAAAATCCCGGGGAATTTATGTGAAAAGGGTGAGTTGGAGGAGCTTCTAATGATCAACAACCAATTTTCCGGCGAGATTCCGGCGAGTTTAGGTTCGTGTGAGAGTCTTACAAGAGTGCGATTGGGTTATAATCTGTTTTCCGGCGAAGTACCGGCCGGATTTTGGGGTCTCCCACATGTTTATCTGTTAGAGCTGGTGAGCAACTCGTTTTCTGGGAAGATTTCAGATGCCATTGCCACTGCTAAGAACCTTTCCATTTTCATTATCTCTAAGAACAACTTCACCGGCATGTTACCGGCGGAGATGGGCCGGCTAGAAAACCTTGTGAAGTTGCTAGCAACAGATAACAAACTCAATGGATCATTACCAGAGAGTCTTACGAATCTTAGGCATCTGTCGAGTTTGGATCTTCGGAATAATGAACTCTCTGGGGAACTTCCTAGTGGAATCAAGTCATGGAAGAATCTCAACGAACTCAATTTAGCTAACAATGAATTCACCGGCGAAATCCCTGAAGAAATCGGAAATCTGCCTGTTCTTAACTACTTAGATCTGTCTGGGAATCTGTTTTATGGGGATGTCCCTCTTGGGTTACAAAATTTGAAGCTCAATCTTCTCAATTTATCGAACAATCACTTGTCAGGTGAGCTTCCTCCATTTTTAGCCAAGGAAATCTACAGAAATAGCTTTTTAGGGAATCCAGATTTGTGTGGACATTTTGAAAGTTTGTGCAATAGCAAAGCTGAAGCCAAAAGCCAGGGCTCTCTCTGGTTACTCCGCTCTATCTTCATCCTTGCGGGTTTCGTGTTTATCGTCGGCGTCATCTGGTTTTACCTCAAATACAGGAAGTTTAAGATGGCAAAGAGAGAAATAGAGAAGAGTAAATGGACATTGATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGATTGTCTTGATGATGATAACATCATAGGCAGTGGATCTTCTGGTAAAGTTTACAAAGTTGTGCTCAACAATGGTGATGCTGTTGCAGTGAAGAAGCTGTTTGGAGGATTGAGGAAAGAAGGTGAAAAAGGTGATATCGAGAAAGGTCAAGTTCAAGACAATGCCTTTGAAGCTGAAATTGATACTTTGGGGAAGATTAGGCACAAGAACATCGTGAAATTGTGGTGCTGTTGTGTTACAAGAGACTACAAGCTTTTAGTGTATGAATATATGCCTAATGGAAGCTTGGGAGATTTGCTTCATAGTAGTAAAAAAGGACTGCTTGATTGGCCTACTAGGTTTAAGATAGCTTTAGATGCTGCAGAAGGACTTTCTTATCTTCATCACGATTGCGTCCCTCCGATCGTTCATCGAGACGTTAAATCAAACAATATCTTGTTGGATGGCGATTTCGGAGCACGGTTGGCCGATTTTGGTGTAGCTAAAGTCATTGATTCAACCGGAAAAGGGCCTAAATCCATGTCCGTTATCGCAGGATCTTGTGGTTACATCGCTCCTGAGTATGCTTATACACTCCGAGTGAACGAAAAAAGCGACATATACAGTTTTGGCGTGGTGATTCTCGAGCTAATAACCGGGAGGCTTCCAGTCGATCCAGAATTCGGGGAGAAGGACTTGGTGAAATGGGTGTGTTACACATTGGATCAAGACGGGATCGATCAAGTTATCGACCGGAAACTGGATAGCTGTTACAAAGAAGAAATATGCAGAGTCCTTAACATTGGGTTGCTATGCACCAGCCCTCTACCAATCAACCGTCCATCCATGCGTAAAGTGGTGAAAATGCTACAAGAAGTAGGGGCAGAGAACCAATTGAAAAGCAACAGTAAAGATGGAAAGTTAACTCCTTACTACTATGAAGATGCATCAGATCAGGGAAGTGTAGCATAG 3003 44.62 MLLQPLFLLFFFFTFFSNPSLLSFSLTQEGLYLHTIKLSLDDPDSALHSWNDRDDTPCSWFGVSCDPQTNSVHSLDLSNTNIAGPFPSLLCRLQNLSFLSLYNNSINMSIPSVISTCTSLHHLDLSQNLLTGELPASISDLPNLRYLDLTGNNFSGDIPESFARFQKLEVLSLVYNLLDGPMPAFLGNITSLKMLNLSYNPFEPSRIPPEFGNLMNLEVLWLTQCNLVGEIPESLGRLKRLTDLDLAFNNLDGSIPKSLMELTSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLTGVIPDELCQLPLESLNLYENKFEGKLPESIANSPGLYELRLFSNRLTGELPSNLGKNSPMRWIDVSNNQFKGKIPGNLCEKGELEELLMINNQFSGEIPASLGSCESLTRVRLGYNLFSGEVPAGFWGLPHVYLLELVSNSFSGKISDAIATAKNLSIFIISKNNFTGMLPAEMGRLENLVKLLATDNKLNGSLPESLTNLRHLSSLDLRNNELSGELPSGIKSWKNLNELNLANNEFTGEIPEEIGNLPVLNYLDLSGNLFYGDVPLGLQNLKLNLLNLSNNHLSGELPPFLAKEIYRNSFLGNPDLCGHFESLCNSKAEAKSQGSLWLLRSIFILAGFVFIVGVIWFYLKYRKFKMAKREIEKSKWTLMSFHKLDFSEYEILDCLDDDNIIGSGSSGKVYKVVLNNGDAVAVKKLFGGLRKEGEKGDIEKGQVQDNAFEAEIDTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMPNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARLADFGVAKVIDSTGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPVDPEFGEKDLVKWVCYTLDQDGIDQVIDRKLDSCYKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAENQLKSNSKDGKLTPYYYEDASDQGSVA* 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14466675 14469789 - Chy12G215070.1 Chy12g00907 238688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00907 1000 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 980 - -
Chy12g00907 1000 SUPERFAMILY L domain-like 361 606 - -
Chy12g00907 1000 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Chy12g00907 1000 Gene3D Transferase(Phosphotransferase) domain 1 775 993 - -
Chy12g00907 1000 Pfam Leucine Rich Repeat 119 140 IPR001611 GO:0005515
Chy12g00907 1000 SMART serkin_6 687 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00907 1000 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 12 980 - -
Chy12g00907 1000 ProSiteProfiles Protein kinase domain profile. 687 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00907 1000 Gene3D Ribonuclease Inhibitor 204 377 IPR032675 -
Chy12g00907 1000 SUPERFAMILY Protein kinase-like (PK-like) 678 967 IPR011009 -
Chy12g00907 1000 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Chy12g00907 1000 SMART LRR_typ_2 286 310 IPR003591 -
Chy12g00907 1000 SMART LRR_typ_2 189 213 IPR003591 -
Chy12g00907 1000 SMART LRR_typ_2 141 164 IPR003591 -
Chy12g00907 1000 SMART LRR_typ_2 93 117 IPR003591 -
Chy12g00907 1000 SMART LRR_typ_2 501 524 IPR003591 -
Chy12g00907 1000 SMART LRR_typ_2 238 262 IPR003591 -
Chy12g00907 1000 Gene3D Ribonuclease Inhibitor 25 203 IPR032675 -
Chy12g00907 1000 MobiDBLite consensus disorder prediction 978 1000 - -
Chy12g00907 1000 Gene3D Ribonuclease Inhibitor 477 616 IPR032675 -
Chy12g00907 1000 Gene3D Ribonuclease Inhibitor 378 476 IPR032675 -
Chy12g00907 1000 Gene3D Phosphorylase Kinase; domain 1 652 774 - -
Chy12g00907 1000 Pfam Leucine rich repeat 502 561 IPR001611 GO:0005515
Chy12g00907 1000 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Chy12g00907 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Chy12g00907 1000 SUPERFAMILY L domain-like 38 375 - -
Chy12g00907 1000 Pfam Protein kinase domain 690 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00176 Chy-Chr4:1553221 Chy12g00907 Chy-Chr12:14466675 0 dispersed
Chy01g00161 Chy-Chr1:1104811 Chy12g00907 Chy-Chr12:14466675 0 transposed
Chy01g00471 Chy-Chr1:3408559 Chy12g00907 Chy-Chr12:14466675 1.04E-52 transposed
Chy01g01185 Chy-Chr1:13889757 Chy12g00907 Chy-Chr12:14466675 1.44E-107 transposed
Chy03g00230 Chy-Chr3:2154205 Chy12g00907 Chy-Chr12:14466675 3.44E-118 transposed
Chy03g01266 Chy-Chr3:15720967 Chy12g00907 Chy-Chr12:14466675 0 transposed
Chy04g02318 Chy-Chr4:27593091 Chy12g00907 Chy-Chr12:14466675 3.50E-123 transposed
Chy06g01584 Chy-Chr6:17955989 Chy12g00907 Chy-Chr12:14466675 0 transposed
Chy06g01989 Chy-Chr6:23866716 Chy12g00907 Chy-Chr12:14466675 9.24E-15 transposed
Chy07g01444 Chy-Chr7:18902186 Chy12g00907 Chy-Chr12:14466675 9.84E-119 transposed
Chy08g00043 Chy-Chr8:1573346 Chy12g00907 Chy-Chr12:14466675 1.79E-126 transposed
Chy08g00451 Chy-Chr8:11129117 Chy12g00907 Chy-Chr12:14466675 3.00E-127 transposed
Chy10g00309 Chy-Chr10:7756346 Chy12g00907 Chy-Chr12:14466675 4.97E-111 transposed
Chy12g01139 Chy-Chr12:16342205 Chy12g00907 Chy-Chr12:14466675 6.30E-73 transposed
Chy12g01251 Chy-Chr12:17129765 Chy12g00907 Chy-Chr12:14466675 3.94E-160 transposed
Chy12g00907 Chy-Chr12:14466675 Chy02g00272 Chy-Chr2:1774454 8.49E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71617 PF00069 Pkinase 4.30E-43 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00907 - - csv:101213542 1921.36