Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00928 ATGGAGGAAGATCCTAATTCTTGGTTAAGAAGAACTAATTTTTCTCACACAATATGCTATCGTTTAGAGTCCTTAAGTTTAGCTTCCTTTCCTGTCACCACTCAGCCACGTCCCAAATCACTTGTGCAATCAAAACCGAACCCTCGTTATAATCTAACGAAGCAGAGGTCTTTATCTCCTTCTCCACAAACGAATCTCTCCAGTGCATTTAAGGATGCACGTATTGATCAGAAGCGATTTTCGACTCCACAGCCTCAGAGAAAAGAACCTCTAAAAGAGAAGAGTAAATGGCTGTTTTGTAAAAGAGCCAAAGTGCAGAATTCCCTCAAGGAAGAAAAGTTAAAAGGACCTTTGAGGAATCTTGTCTCTTTTAAAGGCAGCGAGAAGTTCAAATTCAAGGAGTCTTCTTGGAGTAAGCTTTTTGAGCACGGTGGAGGGAAGGTCACGGCTGTTGAAGCTGTAGACGAATTGTCAATTGACCTGTCTAAGTTGATGTTTGGACATAGATTTGCTTTTGGAGCTCATAGTCGACTTTACCACGGAATTTATGAAGATAAAGTTGTTGCTGCTAAGATGATCAATCTACCAGCCAATGATGAAAATGGCGATCTCGCAGGTCGCTTAGTAAAGCAATTTGGTAGAGAAGTAACCCTTTTATCTCGTCTTCACCATCCCAATGTTATAAAGTTAGTAGCAGCTGTGAAAAAGCCACCTGTTTATTGCATCATCACTGAGTATCTACCTCAGGGTTCCTTGAGGGCATATCTTCACAAACTAGAGAAAAAATCTCTCCCATTGCAAAAACAAATTGCCATTGCCTTAGACATTGCTCGTGGGATGGAATACATTCACTCACAAGGTGTCATTCATCGGGATCTGAAACCTGAAAACATTCTTATTGATCAAGACTTCTGTCTAAAGATTGCTGATTTTGGCATTGCTTGTGAGGAAGCACATTGTGATACACTGGCCGAGGACCCCGGAACGTTCCGTTGGATGGCCCCGGAAATGATCAAACGCAAACCCTATGGAAGAAAGGTTGATATCTACAGCTTTGGACTATTGCTATGGGAATTGGTAGCTGGAAAAATCCCTTATGAGGATATGACTCCAATCCAAGCAGCTTTTGCAGTTGTAGATAAGAATATTAGACCGGTAATACCGAGCGAGTGTCCTCCAGTGATACGGGTGTTAATCGAGCAATGCTGGTGCGAGAAACCGGAAAAGAGGGTGGAGTTTTGGCAGGTGGTGAAAGTGTTGGAGCAAGTTGAGAGTTGTATTGGGGGAGATGGTACATTGATGACGAGTGTAGAGTTAAAGGGGAAGGCAAGTTGGGAAGATCACAAGAAAGTTAGTCCTCTTAATGTTTGGTGTGGGGGTGTACATGAAGAAGAGTCTCTTGAGCATGTCATGACCTCCCAGGATCACTATGACAACAACAAAAGTGTCACCAAGTTATTTATAGTGTATATATATAACCGTGTCACGGCTCATCAAATCGGTTCTTCACTGGAAGTGTTTTTGACCACTGGATCCGACTATCACTTTATTCTTCAACAAGTCCTTCGACTTCTTCAAGATAATGGAGCTGAGATCCTCAATATCAATCAGTCCATGTTTACTGATCGGGTTTTTCATAAGATAACGGCTCAGGTGGATGGAGAAGGAATATTAGGTGGAGAAGATGGTGAAAGGATTTGTGAGACAGTGAAGAAATTTGTTTCAGACTACAAAGATGGGGAATGCAGTGTTGAACGAAATGGTGGTGAAGATTTCTGA 1779 41.99 MEEDPNSWLRRTNFSHTICYRLESLSLASFPVTTQPRPKSLVQSKPNPRYNLTKQRSLSPSPQTNLSSAFKDARIDQKRFSTPQPQRKEPLKEKSKWLFCKRAKVQNSLKEEKLKGPLRNLVSFKGSEKFKFKESSWSKLFEHGGGKVTAVEAVDELSIDLSKLMFGHRFAFGAHSRLYHGIYEDKVVAAKMINLPANDENGDLAGRLVKQFGREVTLLSRLHHPNVIKLVAAVKKPPVYCIITEYLPQGSLRAYLHKLEKKSLPLQKQIAIALDIARGMEYIHSQGVIHRDLKPENILIDQDFCLKIADFGIACEEAHCDTLAEDPGTFRWMAPEMIKRKPYGRKVDIYSFGLLLWELVAGKIPYEDMTPIQAAFAVVDKNIRPVIPSECPPVIRVLIEQCWCEKPEKRVEFWQVVKVLEQVESCIGGDGTLMTSVELKGKASWEDHKKVSPLNVWCGGVHEEESLEHVMTSQDHYDNNKSVTKLFIVYIYNRVTAHQIGSSLEVFLTTGSDYHFILQQVLRLLQDNGAEILNINQSMFTDRVFHKITAQVDGEGILGGEDGERICETVKKFVSDYKDGECSVERNGGEDF* 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14655762 14666764 + Chy12G215280.1 Chy12g00928 238709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00928 592 SUPERFAMILY Protein kinase-like (PK-like) 152 420 IPR011009 -
Chy12g00928 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Chy12g00928 592 Gene3D Phosphorylase Kinase; domain 1 152 247 - -
Chy12g00928 592 SMART serkin_6 164 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00928 592 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 445 - -
Chy12g00928 592 Gene3D Transferase(Phosphotransferase) domain 1 248 453 - -
Chy12g00928 592 MobiDBLite consensus disorder prediction 72 91 - -
Chy12g00928 592 MobiDBLite consensus disorder prediction 34 71 - -
Chy12g00928 592 CDD STKc_MAP3K-like 171 420 - -
Chy12g00928 592 PRINTS Tyrosine kinase catalytic domain signature 282 300 IPR001245 GO:0004672|GO:0006468
Chy12g00928 592 PRINTS Tyrosine kinase catalytic domain signature 328 338 IPR001245 GO:0004672|GO:0006468
Chy12g00928 592 PRINTS Tyrosine kinase catalytic domain signature 391 413 IPR001245 GO:0004672|GO:0006468
Chy12g00928 592 PRINTS Tyrosine kinase catalytic domain signature 244 257 IPR001245 GO:0004672|GO:0006468
Chy12g00928 592 PRINTS Tyrosine kinase catalytic domain signature 347 369 IPR001245 GO:0004672|GO:0006468
Chy12g00928 592 ProSiteProfiles Protein kinase domain profile. 164 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00928 592 MobiDBLite consensus disorder prediction 34 91 - -
Chy12g00928 592 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 445 - -
Chy12g00928 592 Pfam Protein tyrosine and serine/threonine kinase 168 420 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00436 Chy-Chr2:2755036 Chy12g00928 Chy-Chr12:14655762 1.46E-109 dispersed
Chy05g00823 Chy-Chr5:11816512 Chy12g00928 Chy-Chr12:14655762 7.68E-89 dispersed
Chy06g02262 Chy-Chr6:26614440 Chy12g00928 Chy-Chr12:14655762 3.22E-73 dispersed
Chy12g00928 Chy-Chr12:14655762 Chy12g01272 Chy-Chr12:17302183 5.98E-107 dispersed
Chy01g00338 Chy-Chr1:2463198 Chy12g00928 Chy-Chr12:14655762 7.78E-09 wgd
Chy12g00928 Chy-Chr12:14655762 Chy02g00294 Chy-Chr2:1918726 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71618 PF07714 PK_Tyr_Ser-Thr 2.10E-58 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00928 - - csv:101222817 887.486