Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00947 ATGGCCCTTCAACTTCACGCTTCGTCTTCCTCCTCTTTCTTCCTCAATCTCAATCTCAAAACAACAACTTGCGTGCACCTTAACAAATTTCACCGACAACGATTTAGAACAATATTGAATGAAGTAGAATTGGACGAAAAGATGAAAGCTATTGGCGAATTTGGAGTAGTAAACCAACGGGTGAGTGAAATGAGGGGTTTGGTCATCCGAGTAGGTGAGAACTCGCGAAGAGGAACAAGACGATCTGGCGAGATGAATTTTCACTTACTGGTCGAATGGGGTTGGTTGAATTTCGAACCAAAAGACTCCACAGCGCCCGCCAATCTTTGTCAAACCAAAAAGGGGAAGAAAATTCTTTACAGCAAAATCTCTCGATCCTCTCTTCTTCCTTGTAATGGGAACCACTGGCTGCAACGACTGATTCCTCAATTTTTTGTGGTTCACTTTGCTTCGACAAATGATCATCGGTTAGGGACGATCCTTTTTCAGTATCGTGCTCTGGTTTTTCCCACTTCATTTGATTTGATGTTCAGGAAGTTTTACAGAATTACGGCCCCAAGTATGAGTTGCACCTGCTTCGGTTCCTCTACTTTGGAGAAGAAACGAATCTCTACACGTGCTGATAAGGAATTGGACATCGACTTGCTTGAGAATGTAAAACAAATCTCCTTCAATGAATTAAGATCTGCTTCGGACGATTTCCATTCGAACAATAGAATTGGACGAGGAGGTTTTGGAACTGTTTACAAGGGCACATTAAGGAATGGCGTACAAGTTGCGATAAAGAAACTCTCTATAGAGTCTAAGCAAGGCGCTCGCGAATTTTTGACAGAGATCAAAACCATTTCAAATATTAGGCATCCTAACCTTGTTGAATTAATTGGATGCTGTTCTCAAAAAGCTAGCCGAATCTTGGTATATGAATATCTGGAAAACAACAGTCTCGACCATGCTTTGTTAGATCCTAAAAAAATAAGCGTCCACCTGGATTGGAGGAAGAGGTCCTCTATTTGCATTGGTACTGCTAGGGGTCTTCAATTTCTTCACGAGGAAGCTGTTCCACATATTGTGCATAGAGACATCAAGGCTAGTAATATTCTCCTTGATAAAGACTTCAATCCGAAAATTGGTGACTTTGGATTAGCCAAACTTTTCCCAGATGATATTACTCACATTAGCACAAGAATTGCAGGAACAACTGGTTATTTGGCTCCAGAATATGCATTGGGAGGTCAGCTAACTCTGAAGGCCGATGTCTATAGCTTTGGAGTCCTCATCCTTGAACTAGTTAGTGGTAAACGTAGCAGTACAGTTTTTGGGGTAGAAATATCAATACTCTTGCTGGGAAGGGTGTGGGAGTTATATGAAGAAGGAAAACTCTTGGATATAGTGGATCCTAGACTAGGAGATTACCCTCAGGAAGAAGTGCTTAGGTACATGAAAGTGGCTCTTTTTTGCACACAAGCAGCTGCAAATCGACGGCCAGTGATGAGCCAAGTCATTGACATGCTCACAAAGAATATCAAGCTGAACGAGAAGCTACTTACTGCCCCCGGGTTCTACGGAGGCTTGGGGACTAGTGACATTCCTTCAGTGAGCAAGAAGACCTCAAACGCTTCCACTAGCAACGAGATGAGCTTTGCAGGCGTCTCCATAACTAAAATCACCCCCAGATGA 1677 42.58 MALQLHASSSSSFFLNLNLKTTTCVHLNKFHRQRFRTILNEVELDEKMKAIGEFGVVNQRVSEMRGLVIRVGENSRRGTRRSGEMNFHLLVEWGWLNFEPKDSTAPANLCQTKKGKKILYSKISRSSLLPCNGNHWLQRLIPQFFVVHFASTNDHRLGTILFQYRALVFPTSFDLMFRKFYRITAPSMSCTCFGSSTLEKKRISTRADKELDIDLLENVKQISFNELRSASDDFHSNNRIGRGGFGTVYKGTLRNGVQVAIKKLSIESKQGAREFLTEIKTISNIRHPNLVELIGCCSQKASRILVYEYLENNSLDHALLDPKKISVHLDWRKRSSICIGTARGLQFLHEEAVPHIVHRDIKASNILLDKDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLILELVSGKRSSTVFGVEISILLLGRVWELYEEGKLLDIVDPRLGDYPQEEVLRYMKVALFCTQAAANRRPVMSQVIDMLTKNIKLNEKLLTAPGFYGGLGTSDIPSVSKKTSNASTSNEMSFAGVSITKITPR* 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14797602 14816313 + Chy12G215470.1 Chy12g00947 238728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00947 558 Pfam Protein kinase domain 234 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00947 558 CDD STKc_IRAK 240 506 - -
Chy12g00947 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 356 368 IPR008271 GO:0004672|GO:0006468
Chy12g00947 558 PANTHER - 175 539 - -
Chy12g00947 558 Gene3D Transferase(Phosphotransferase) domain 1 310 515 - -
Chy12g00947 558 SUPERFAMILY Protein kinase-like (PK-like) 217 504 IPR011009 -
Chy12g00947 558 SMART serkin_6 234 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00947 558 Gene3D Phosphorylase Kinase; domain 1 203 309 - -
Chy12g00947 558 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 175 539 - -
Chy12g00947 558 ProSitePatterns Protein kinases ATP-binding region signature. 240 263 IPR017441 GO:0005524
Chy12g00947 558 ProSiteProfiles Protein kinase domain profile. 234 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02245 Chy-Chr4:27168290 Chy12g00947 Chy-Chr12:14797602 2.17E-133 dispersed
Chy07g01051 Chy-Chr7:15447287 Chy12g00947 Chy-Chr12:14797602 8.03E-117 dispersed
Chy12g00947 Chy-Chr12:14797602 Chy10g00188 Chy-Chr10:4643757 8.20E-99 dispersed
Chy12g00947 Chy-Chr12:14797602 Chy07g00996 Chy-Chr7:14682016 2.00E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71620 PF00069 Pkinase 7.70E-46 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00947 - - csv:101207026 723.391