Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy12g00974 | ATGAACGATCTATTCTCGAACTCGTTCAAGAAGTACACGGATCTGAAGCAACAAGCATATCTGGACAGCATGGAGGCTGGGAATGAGAGTGTAAATTTGGACAGATTCTTTGAGGATGTTGAAAATGTTAAAGATGACATGAAACAAGTGGAGAGTTTGTACAAGAAATTGCAGCAGGCTAATGAGGAGTGTAAGGTTGTGCATAATGCCAAGACAATGAAGGAGCTGAGGGGCCGAATGGAGACTGATGTTGCTCAAGTTCTCAAGCGAGTCAAATTGATCAAAGGAAAGCTCGAAGCTCTTGAGCGTTCTAATGCCGCTCACCGTGGCCTCCCCGGTTGCGGCCCTGGCTCTTCTGCTGACCGAACTCGAACCTCTGTTGTCAGCGGCTTGGGAAAGAAGCTCAAAGATGTTATGGATGATTTTCAAGGCCTTAGAGCTCGAATGAATGCCGAGTATAAAGAAACCGTCGAGCGAAGGTACTTCACTGTGACAGGGCAGAAAGCAAATGAAGAAACAATAGAGAATTTGATATCAAGTGGGGAAAGTGAGAGCTTTCTACAGAAGGCAATTCAAGAACAGGGTAGAGGTCAAATAATGGACACAATTTCAGAGATTCAAGAACGACATGACGCTGTGAAGGAAATAGAGAAGAATTTGATAGAGCTGCATCAGATTTTCTTGGACATGGCAGCTTTAGTTGAAGCTCAAGGCCACCAACTGAACGACATTGAAAGCCATGTCGCGCATGCTAACTCGTTTGTTAGAAGAGGAACAGAACAACTCCAAGAAGCCAGAGAGTATCAAAAGAGCTCAAGGAAATGGACTTGCTATGCCATACTTTTGGGAGCTGTTCTTATTATCATTCTTCTCTTCCCACTATTAACTTCAATTTTACCTCATTTGTTGTAG | 912 | 43.64 | MNDLFSNSFKKYTDLKQQAYLDSMEAGNESVNLDRFFEDVENVKDDMKQVESLYKKLQQANEECKVVHNAKTMKELRGRMETDVAQVLKRVKLIKGKLEALERSNAAHRGLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAILLGAVLIIILLFPLLTSILPHLL* | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 15035977 | 15037244 | - | Chy12G215740.1 | Chy12g00974 | 238755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy12g00974 | 303 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020 | |
Chy12g00974 | 303 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
Chy12g00974 | 303 | Gene3D | - | 33 | 160 | - | - | |
Chy12g00974 | 303 | CDD | SynN | 33 | 190 | IPR006011 | GO:0016020 | |
Chy12g00974 | 303 | Pfam | SNARE domain | 240 | 291 | IPR000727 | - | |
Chy12g00974 | 303 | Gene3D | - | 193 | 295 | - | - | |
Chy12g00974 | 303 | PANTHER | SYNTAXIN | 6 | 295 | IPR045242 | - | |
Chy12g00974 | 303 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020|GO:0016192 | |
Chy12g00974 | 303 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
Chy12g00974 | 303 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
Chy12g00974 | 303 | Coils | Coil | 33 | 70 | - | - | |
Chy12g00974 | 303 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020 | |
Chy12g00974 | 303 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Chy12g00974 | 303 | PANTHER | SYNTAXIN-124-RELATED | 6 | 295 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy06g02160 | Chy-Chr6:25892952 | Chy12g00974 | Chy-Chr12:15035977 | 1.46E-08 | dispersed | |
Chy08g00517 | Chy-Chr8:12391637 | Chy12g00974 | Chy-Chr12:15035977 | 3.10E-92 | dispersed | |
Chy08g00980 | Chy-Chr8:17055773 | Chy12g00974 | Chy-Chr12:15035977 | 9.88E-113 | dispersed | |
Chy11g00597 | Chy-Chr11:6820796 | Chy12g00974 | Chy-Chr12:15035977 | 2.76E-32 | dispersed | |
Chy12g00974 | Chy-Chr12:15035977 | Chy04g01850 | Chy-Chr4:24681494 | 3.38E-123 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy12g00974 | K08486 | - | csv:101217140 | 580.482 |