Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00974 ATGAACGATCTATTCTCGAACTCGTTCAAGAAGTACACGGATCTGAAGCAACAAGCATATCTGGACAGCATGGAGGCTGGGAATGAGAGTGTAAATTTGGACAGATTCTTTGAGGATGTTGAAAATGTTAAAGATGACATGAAACAAGTGGAGAGTTTGTACAAGAAATTGCAGCAGGCTAATGAGGAGTGTAAGGTTGTGCATAATGCCAAGACAATGAAGGAGCTGAGGGGCCGAATGGAGACTGATGTTGCTCAAGTTCTCAAGCGAGTCAAATTGATCAAAGGAAAGCTCGAAGCTCTTGAGCGTTCTAATGCCGCTCACCGTGGCCTCCCCGGTTGCGGCCCTGGCTCTTCTGCTGACCGAACTCGAACCTCTGTTGTCAGCGGCTTGGGAAAGAAGCTCAAAGATGTTATGGATGATTTTCAAGGCCTTAGAGCTCGAATGAATGCCGAGTATAAAGAAACCGTCGAGCGAAGGTACTTCACTGTGACAGGGCAGAAAGCAAATGAAGAAACAATAGAGAATTTGATATCAAGTGGGGAAAGTGAGAGCTTTCTACAGAAGGCAATTCAAGAACAGGGTAGAGGTCAAATAATGGACACAATTTCAGAGATTCAAGAACGACATGACGCTGTGAAGGAAATAGAGAAGAATTTGATAGAGCTGCATCAGATTTTCTTGGACATGGCAGCTTTAGTTGAAGCTCAAGGCCACCAACTGAACGACATTGAAAGCCATGTCGCGCATGCTAACTCGTTTGTTAGAAGAGGAACAGAACAACTCCAAGAAGCCAGAGAGTATCAAAAGAGCTCAAGGAAATGGACTTGCTATGCCATACTTTTGGGAGCTGTTCTTATTATCATTCTTCTCTTCCCACTATTAACTTCAATTTTACCTCATTTGTTGTAG 912 43.64 MNDLFSNSFKKYTDLKQQAYLDSMEAGNESVNLDRFFEDVENVKDDMKQVESLYKKLQQANEECKVVHNAKTMKELRGRMETDVAQVLKRVKLIKGKLEALERSNAAHRGLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAILLGAVLIIILLFPLLTSILPHLL* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15035977 15037244 - Chy12G215740.1 Chy12g00974 238755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00974 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Chy12g00974 303 CDD SNARE_syntaxin1-like 202 264 - -
Chy12g00974 303 Gene3D - 33 160 - -
Chy12g00974 303 CDD SynN 33 190 IPR006011 GO:0016020
Chy12g00974 303 Pfam SNARE domain 240 291 IPR000727 -
Chy12g00974 303 Gene3D - 193 295 - -
Chy12g00974 303 PANTHER SYNTAXIN 6 295 IPR045242 -
Chy12g00974 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Chy12g00974 303 SMART tSNARE_6 198 265 IPR000727 -
Chy12g00974 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Chy12g00974 303 Coils Coil 33 70 - -
Chy12g00974 303 SMART SynN_4 28 154 IPR006011 GO:0016020
Chy12g00974 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Chy12g00974 303 PANTHER SYNTAXIN-124-RELATED 6 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00974 K08486 STX1B_2_3; syntaxin 1B/2/3 - csv:101217140 580.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02160 Chy-Chr6:25892952 Chy12g00974 Chy-Chr12:15035977 1.46E-08 dispersed
Chy08g00517 Chy-Chr8:12391637 Chy12g00974 Chy-Chr12:15035977 3.10E-92 dispersed
Chy08g00980 Chy-Chr8:17055773 Chy12g00974 Chy-Chr12:15035977 9.88E-113 dispersed
Chy11g00597 Chy-Chr11:6820796 Chy12g00974 Chy-Chr12:15035977 2.76E-32 dispersed
Chy12g00974 Chy-Chr12:15035977 Chy04g01850 Chy-Chr4:24681494 3.38E-123 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01173 . 476 779 SNARE and Associated Proteins AT3G24350 62.5 3.1e-90 328.9
Chy08g00517 . 1 310 SNARE and Associated Proteins AT1G08560 66.4 1.4e-99 359.8
Chy02g00640 . 1 303 SNARE and Associated Proteins AT2G18260 53.8 3.7e-84 308.5
Chy04g01850 . 22 279 SNARE and Associated Proteins AT3G11820 80.6 3.0e-113 405.2
Chy08g00980 . 25 284 SNARE and Associated Proteins AT3G11820 70.0 3.5e-98 355.1
Chy12g00974 . 31 281 SNARE and Associated Proteins AT3G11820 65.3 2.4e-91 332.4
Chy04g01397 . 21 280 SNARE and Associated Proteins AT3G11820 51.5 7.2e-67 251.1
Chy04g01850 . 31 279 SNARE and Associated Proteins AT3G52400 69.5 3.8e-90 328.6
Chy08g00980 . 36 284 SNARE and Associated Proteins AT3G52400 66.7 1.7e-85 313.2
Chy12g00974 . 1 281 SNARE and Associated Proteins AT3G52400 56.0 2.1e-80 296.2
Chy12g00974 . 1 299 SNARE and Associated Proteins AT4G03330 67.9 4.0e-107 384.8
Chy04g01850 . 1 278 SNARE and Associated Proteins AT4G03330 56.9 1.9e-80 296.2
Chy08g00980 . 1 302 SNARE and Associated Proteins AT4G03330 54.0 1.8e-78 289.7
Chy04g01397 . 34 280 SNARE and Associated Proteins AT4G03330 54.7 9.1e-67 250.8
Chy12g00974 . 1 299 SNARE and Associated Proteins AT1G61290 79.6 1.2e-127 453.0
Chy04g01850 . 1 279 SNARE and Associated Proteins AT1G61290 62.6 2.2e-89 325.9
Chy08g00980 . 1 296 SNARE and Associated Proteins AT1G61290 55.7 1.3e-81 300.1
Chy04g01397 . 35 280 SNARE and Associated Proteins AT1G61290 50.4 6.7e-62 234.6
Chy12g00974 . 1 299 SNARE and Associated Proteins AT1G11250 78.3 1.2e-124 443.0
Chy04g01850 . 1 279 SNARE and Associated Proteins AT1G11250 62.4 2.3e-91 332.4
Chy08g00980 . 1 296 SNARE and Associated Proteins AT1G11250 55.4 3.0e-83 305.4
Chy04g01397 . 35 280 SNARE and Associated Proteins AT1G11250 51.6 5.4e-64 241.5
Chy04g01397 . 3 299 SNARE and Associated Proteins AT3G03800 73.1 3.0e-110 395.2
Chy11g00597 . 42 297 SNARE and Associated Proteins AT3G03800 58.2 3.3e-77 285.4
Chy04g01397 . 3 198 SNARE and Associated Proteins AT5G08080 76.5 6.6e-75 277.3
Chy11g00597 . 24 214 SNARE and Associated Proteins AT5G08080 59.2 3.9e-51 198.4
Chy06g02160 . 1 256 SNARE and Associated Proteins AT5G16830 58.8 1.4e-74 276.6
Chy06g02160 . 1 256 SNARE and Associated Proteins AT5G46860 65.2 6.9e-79 290.8
Chy06g02160 . 1 256 SNARE and Associated Proteins AT4G17730 60.9 3.3e-73 271.9
Chy06g02160 . 65 256 SNARE and Associated Proteins AT1G32270 59.9 9.2e-52 201.1
Chy10g00436 . 1 336 SNARE and Associated Proteins AT5G05760 65.6 3.9e-111 398.3
Chy03g01173 . 476 779 SNARE and Associated Proteins AT3G24350 62.5 3.1e-90 328.9
Chy05g01060 . 1 317 SNARE and Associated Proteins AT5G26980 75.7 1.5e-123 439.5
Chy01g01727 . 1 310 SNARE and Associated Proteins AT5G26980 66.6 1.6e-101 366.3
Chy01g01727 . 1 309 SNARE and Associated Proteins AT4G02195 67.4 9.8e-104 373.6
Chy05g01060 . 1 317 SNARE and Associated Proteins AT4G02195 62.4 1.5e-99 359.8
Chy05g01060 . 1 317 SNARE and Associated Proteins AT3G05710 74.5 1.2e-125 446.4
Chy01g01727 . 1 310 SNARE and Associated Proteins AT3G05710 63.7 4.1e-97 351.7
Chy01g01059 . 1 234 SNARE and Associated Proteins AT1G16240 73.1 1.5e-90 329.3
Chy06g01863 . 4 231 SNARE and Associated Proteins AT1G16240 65.8 5.6e-77 284.3
Chy01g01059 . 1 234 SNARE and Associated Proteins AT1G79590 72.6 1.1e-89 326.6
Chy06g01863 . 4 231 SNARE and Associated Proteins AT1G79590 65.4 3.8e-77 285.0
Chy11g01970 . 106 260 SNARE and Associated Proteins AT1G28490 69.7 2.9e-53 205.3
Chy04g00793 . 1 261 SNARE and Associated Proteins AT3G09740 77.9 7.5e-110 393.7
Chy04g02075 . 1 235 SNARE and Associated Proteins AT3G09740 76.8 2.1e-96 349.0
Chy04g00793 . 1 261 SNARE and Associated Proteins AT3G45280 65.5 4.0e-87 318.2
Chy04g02075 . 1 230 SNARE and Associated Proteins AT3G45280 64.4 5.1e-74 274.6
Chy04g00793 . 1 261 SNARE and Associated Proteins AT3G61450 68.9 7.9e-96 347.1
Chy04g02075 . 1 235 SNARE and Associated Proteins AT3G61450 66.4 3.8e-82 301.6
Chy03g00164 . 65 309 SNARE and Associated Proteins AT1G51740 73.3 1.7e-92 335.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005716 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g00974 Chy_Chr12 FPKM 9.100894 10.374719 7.81084 8.429014 8.915775 7.849 9.224413 13.881295 11.076846 11.824769