Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00974 ATGAACGATCTATTCTCGAACTCGTTCAAGAAGTACACGGATCTGAAGCAACAAGCATATCTGGACAGCATGGAGGCTGGGAATGAGAGTGTAAATTTGGACAGATTCTTTGAGGATGTTGAAAATGTTAAAGATGACATGAAACAAGTGGAGAGTTTGTACAAGAAATTGCAGCAGGCTAATGAGGAGTGTAAGGTTGTGCATAATGCCAAGACAATGAAGGAGCTGAGGGGCCGAATGGAGACTGATGTTGCTCAAGTTCTCAAGCGAGTCAAATTGATCAAAGGAAAGCTCGAAGCTCTTGAGCGTTCTAATGCCGCTCACCGTGGCCTCCCCGGTTGCGGCCCTGGCTCTTCTGCTGACCGAACTCGAACCTCTGTTGTCAGCGGCTTGGGAAAGAAGCTCAAAGATGTTATGGATGATTTTCAAGGCCTTAGAGCTCGAATGAATGCCGAGTATAAAGAAACCGTCGAGCGAAGGTACTTCACTGTGACAGGGCAGAAAGCAAATGAAGAAACAATAGAGAATTTGATATCAAGTGGGGAAAGTGAGAGCTTTCTACAGAAGGCAATTCAAGAACAGGGTAGAGGTCAAATAATGGACACAATTTCAGAGATTCAAGAACGACATGACGCTGTGAAGGAAATAGAGAAGAATTTGATAGAGCTGCATCAGATTTTCTTGGACATGGCAGCTTTAGTTGAAGCTCAAGGCCACCAACTGAACGACATTGAAAGCCATGTCGCGCATGCTAACTCGTTTGTTAGAAGAGGAACAGAACAACTCCAAGAAGCCAGAGAGTATCAAAAGAGCTCAAGGAAATGGACTTGCTATGCCATACTTTTGGGAGCTGTTCTTATTATCATTCTTCTCTTCCCACTATTAACTTCAATTTTACCTCATTTGTTGTAG 912 43.64 MNDLFSNSFKKYTDLKQQAYLDSMEAGNESVNLDRFFEDVENVKDDMKQVESLYKKLQQANEECKVVHNAKTMKELRGRMETDVAQVLKRVKLIKGKLEALERSNAAHRGLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAILLGAVLIIILLFPLLTSILPHLL* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15035977 15037244 - Chy12G215740.1 Chy12g00974 238755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00974 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Chy12g00974 303 CDD SNARE_syntaxin1-like 202 264 - -
Chy12g00974 303 Gene3D - 33 160 - -
Chy12g00974 303 CDD SynN 33 190 IPR006011 GO:0016020
Chy12g00974 303 Pfam SNARE domain 240 291 IPR000727 -
Chy12g00974 303 Gene3D - 193 295 - -
Chy12g00974 303 PANTHER SYNTAXIN 6 295 IPR045242 -
Chy12g00974 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Chy12g00974 303 SMART tSNARE_6 198 265 IPR000727 -
Chy12g00974 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Chy12g00974 303 Coils Coil 33 70 - -
Chy12g00974 303 SMART SynN_4 28 154 IPR006011 GO:0016020
Chy12g00974 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Chy12g00974 303 PANTHER SYNTAXIN-124-RELATED 6 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02160 Chy-Chr6:25892952 Chy12g00974 Chy-Chr12:15035977 1.46E-08 dispersed
Chy08g00517 Chy-Chr8:12391637 Chy12g00974 Chy-Chr12:15035977 3.10E-92 dispersed
Chy08g00980 Chy-Chr8:17055773 Chy12g00974 Chy-Chr12:15035977 9.88E-113 dispersed
Chy11g00597 Chy-Chr11:6820796 Chy12g00974 Chy-Chr12:15035977 2.76E-32 dispersed
Chy12g00974 Chy-Chr12:15035977 Chy04g01850 Chy-Chr4:24681494 3.38E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00974 K08486 - csv:101217140 580.482