Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00977 ATGGCGTCCAAACGCCACCGTCTTCAAGAAGACGAATACGAGGCGAAGGAACCCAAAACTGCCCGTGTTTCAGATGCTTTTGAGTTGAAGAAGCAGCACCCCGTAATGCTCAACCCTGCCGACTGCGACTTGGATTTCGAGATCAAAAGTGATGGTCTTCAAGGATCAGCTCTTTATGAGAAAGGTTTTGCTTATTGCTGGTCAGGAGCTCGGACCACTGTGGGTATTACTGGTGGAAAATATTGTTTTGGTTGCAAGATTATCTCTTTACAGCCAGTTGAAATGAGTGATACTGCTCCAGATCAGCAGCATCTTTGTCGTGTCGGCATTTCCAGAGGGGACAGTCCAGTGGGAAATCTTGGAGAGACTATACAAAGTTTTGGATTTGGTGGTACCGGAAAGTTTTCAAATGCTGGAAAATTTTCTGACTATGGTGAAAAGTTTGGATTTGGTGATTCCATTGTTTGCGCTGTAAATCTTGAAAGCAAGCCTCTGGCCTCTATTGGATTTTCCAAAAACGGCAAATGGTTGGGTACTGCTATACAATTTGATGCTGGTCCAAGAGGCCTTGGTGTGGTGGATTCTCCACTGAGAAAGTGTCGATGGGAAACAGCATTCTTCCCTCATGTATTGTTGAAGAATGTTGAGGTTCAGTTGCAATTCAGCGTTGAAGAGGGGCTTGTTCCTGAAGAAGGCTTTAAACCGTGGGCCTGTGCTTTGGATGATAACAATGCACTGCTTGGACCTACTTTTAATAATGTAAGAGATTGTGAAGTCATGATGATGGTGGGTCTACCGGCTTCTGGAAAAAGTACATGGGCTAAGAAATGGGCAGATGATCATCCTGAGAAACGCTATATTTTGCTTGGGACTAATCTAATTCTGGACCAAATGAAGTTACCAGGTCTATTGCGAAAACACAATTATGGTGAACGCTTTGATCGTTTGATGGATCAAGCAACTGAAATTTTCAATATACTTCTCTCGAGGGCAGCCGCTGTGCCTCAGAATTACATAATTGACCAAACAAATGTTTACAAGCATGCTCGTAAACGGAAATTGAAGCCATTTGCAGACTTCCAGAAAATTGCTGTTGTGGTATTCCCGAAGCCGGAGGAGTTGCAGCGTCGCTCGGCTGAAAGATTTAGAGAAACGGGGAAAGAAGTACCAGCTGATGCAGTGAATAAAATGTTAGCCAATTATATCTTGCCCACTAGCAAGGACATACCTGGATCAGGAGAATACTTTGATGAGGTTATATTTGTAGAACTCGATCGCGCAGAGTCTCAAAGATGTTTGGATGCGATGAAACGTGCTCTACCATCTGAATCATGTGATGACTTTACATCGTTTTCTAAAGCTAGTACTGCTCCTCTTGTTTCACCTTCCTCTCGAGATCAAGGTCGACGAGATATGCCAGATGCTGGACGATATGGAATTCCAAGATTTATTTCTGAAGTACATCAGGAAAATATGACTTCTCCTTTACCTAGGTTTATTCCCCCTCGCGGACCATACGGGAGTTTGATTGGTGAAACCAGGTACCCTGGCCATCTGCTTCACAGTTATCCTCGGAGTGATCCTTACAGCATTGGTGGACGTGGACACTTCCTAGACAGTCGTCAGATGGGTGAACTGTGCCAAGGGGAATACACTGATGTAGCTCATCCATTCCCACCCACTGGTCCACCTTATGGAACCCCACCACCAAGAATTACATATCAATTTCCTTCCAATATGCCTTATGATGGTAGAGGGTATACCTCCCCACGACCAAGATTTAGGTGCCAGGAAATAAGGAATAAACGAAAAGGAAAAGGTGGCTGCCGGCTTGAAGATGCAGACTTGCGCTCCAACGAAGAAATGCCAACCCAAACTTTCTTTAGCAGAGTTTCCAGAGTTTTCCACGACCATCCTTCTATTTCCAGGCTCCTCGTTCTTGTCACCGTTAGTGGGGGGAGCCTTGTAGCATATGCCGATGCTGGCCCAACCAATGGTGTACCCAGTATCGCATCTACAGCCAATGTAGATGAGAAGAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTATTTTGCATTCACCCCATTATTGCCAAGTGTTACTTGTGGTACGGTGGAAGCCCGTAGCATTGTTGAACCAATTCGCAACCTTGTGAGGAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAGTGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGCCGATCTAATGAAAACAACAATCTGAATGGGAAAAAGGAATTTGTTGTTGATTATGACTACCTAGTGATAGCTGTGGGAGCACAAGTTAATACATTCAATACCCCTGGCGTTGTAGAGAATTGCCATTTCTTGAAGGAAGTAGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCTTGGATGAAGAAGATAGAAAGAAAATACTTCATTTTGCTATTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCAGCAGAACTTCATGATTTTGTTAATGAGGACTTGGTCAAATTATATCCTGGACTACAGGAATTTGTAAAAATTACTCTTCTAGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTACTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTGATTAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTATGCCTTATGGAATGACTGTGTGGTCAACTGGTATCGGAACCCGTCCAATCATAAGGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGATGAGTGGCTACGAGTTGAGGGATGTGACAATGTATATGCACTGGGTGACTGTGCTACTATAAATCAACGAAGAGTCATGGAGGATATTTCGGCCATATTTAGCAAGGCAGACAAAGACAATTCCGGGACACTTACAGTAAAAGAATTCCAAGAAGTCATTGATGACATATGTGAAAGATATCCTCAGGTGGAGCTATATTTGAAGAATAAGCAGATGCACAACATTGTGGATCTTTTAAAAGGATCCAAAGGGGATGTTGCAAAGGAGTCTATCGAATTAGACATTGAAGAGTTTAAATCAGCTCTTTCCCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACTGCACAGGTGGCTGCGCAACAAGGTGCATATCTTGCCCATTGTTTTAACCGTATGGAAGAGTGCGAAAAGTATCCTGAAGGTCCTCTTAGGTTTAGGGGATCAGGACGCCACCGTTTTCGGGCCTTTCGGTACAAACATCTTGGACAATTTGCACCATTGGGCGGAGAACAAACAGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGTACAAGAGCACTAGTGGTTACAGATTGGACAAGGCGATTTGTTTTTGGGAGAGATTCGAGTCGCATATGA 3618 43.45 MASKRHRLQEDEYEAKEPKTARVSDAFELKKQHPVMLNPADCDLDFEIKSDGLQGSALYEKGFAYCWSGARTTVGITGGKYCFGCKIISLQPVEMSDTAPDQQHLCRVGISRGDSPVGNLGETIQSFGFGGTGKFSNAGKFSDYGEKFGFGDSIVCAVNLESKPLASIGFSKNGKWLGTAIQFDAGPRGLGVVDSPLRKCRWETAFFPHVLLKNVEVQLQFSVEEGLVPEEGFKPWACALDDNNALLGPTFNNVRDCEVMMMVGLPASGKSTWAKKWADDHPEKRYILLGTNLILDQMKLPGLLRKHNYGERFDRLMDQATEIFNILLSRAAAVPQNYIIDQTNVYKHARKRKLKPFADFQKIAVVVFPKPEELQRRSAERFRETGKEVPADAVNKMLANYILPTSKDIPGSGEYFDEVIFVELDRAESQRCLDAMKRALPSESCDDFTSFSKASTAPLVSPSSRDQGRRDMPDAGRYGIPRFISEVHQENMTSPLPRFIPPRGPYGSLIGETRYPGHLLHSYPRSDPYSIGGRGHFLDSRQMGELCQGEYTDVAHPFPPTGPPYGTPPPRITYQFPSNMPYDGRGYTSPRPRFRCQEIRNKRKGKGGCRLEDADLRSNEEMPTQTFFSRVSRVFHDHPSISRLLVLVTVSGGSLVAYADAGPTNGVPSIASTANVDEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNLVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAIVGGGPTGVEFAAELHDFVNEDLVKLYPGLQEFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIRDFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRRVMEDISAIFSKADKDNSGTLTVKEFQEVIDDICERYPQVELYLKNKQMHNIVDLLKGSKGDVAKESIELDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMEECEKYPEGPLRFRGSGRHRFRAFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFVFGRDSSRI* 1206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15050953 15062017 + Chy12G215770.1 Chy12g00977 238758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00977 1205 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 219 IPR013320 -
Chy12g00977 1205 SMART efh_1 1007 1035 IPR002048 GO:0005509
Chy12g00977 1205 SUPERFAMILY EF-hand 996 1091 IPR011992 -
Chy12g00977 1205 ProSiteProfiles EF-hand calcium-binding domain profile. 1003 1038 IPR002048 GO:0005509
Chy12g00977 1205 MobiDBLite consensus disorder prediction 455 474 - -
Chy12g00977 1205 Pfam AAA domain 259 401 - -
Chy12g00977 1205 Gene3D - 253 435 IPR027417 -
Chy12g00977 1205 ProSitePatterns EF-hand calcium-binding domain. 1016 1028 IPR018247 -
Chy12g00977 1205 Gene3D - 32 247 IPR043136 -
Chy12g00977 1205 PANTHER NADH DEHYDROGENASE 624 1205 IPR045024 GO:0003954|GO:0006116
Chy12g00977 1205 Pfam Pyridine nucleotide-disulphide oxidoreductase 681 1006 IPR023753 GO:0016491
Chy12g00977 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 402 IPR027417 -
Chy12g00977 1205 Pfam SPRY domain 102 182 IPR003877 GO:0005515
Chy12g00977 1205 PANTHER NAD(P)H DEHYDROGENASE B2 624 1205 - -
Chy12g00977 1205 CDD SPRY_hnRNP 35 225 IPR035778 -
Chy12g00977 1205 PRINTS FAD-dependent pyridine nucleotide reductase signature 683 702 - -
Chy12g00977 1205 PRINTS FAD-dependent pyridine nucleotide reductase signature 786 804 - -
Chy12g00977 1205 PRINTS FAD-dependent pyridine nucleotide reductase signature 847 865 - -
Chy12g00977 1205 SMART SPRY_3 78 225 IPR003877 GO:0005515
Chy12g00977 1205 SUPERFAMILY FAD/NAD(P)-binding domain 838 1000 IPR036188 -
Chy12g00977 1205 SUPERFAMILY FAD/NAD(P)-binding domain 680 899 IPR036188 -
Chy12g00977 1205 Gene3D - 1048 1204 - -
Chy12g00977 1205 Gene3D - 670 1032 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01357 Chy-Chr11:19846812 Chy12g00977 Chy-Chr12:15050953 6.78E-60 dispersed
Chy11g01079 Chy-Chr11:15466106 Chy12g00977 Chy-Chr12:15050953 0 transposed
Chy01g00375 Chy-Chr1:2672962 Chy12g00977 Chy-Chr12:15050953 0 wgd
Chy12g00977 Chy-Chr12:15050953 Chy02g00331 Chy-Chr2:2144396 6.03E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00977 K03885 K15047 csv:101204384 1172.92