Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00990 ATGTTTCTCAAACAGTCAGTAGCAGTCGATACCTTAAAAGCAGGCCAGTTCATTAACGATACTCAATTCATTGTTTCAGCCACACAGAAGTTTGCATTAGGTTTCTTCACTGAACCAAAATCCTCAAATTTCAAGTACTTGGGAATATGGTATAAAAAAATTCCCGACGTGGTTGTGTGGGTGGCAAACAGAGACAACCCAATTATAAACTCCTCTGCCACTTTGAATATCAATGGAGATGGAAGCTTAGTTCTTGTAAATCAAACAGGTCAAGCTTTTTGGTTTTCAAATTCTTCAAGATCAGTTAAAAACGCCATTGCCCAGTTGCTGGATACAGGTAATTTTGTGTTAAGAGATTCGAATTCAGAGTCTGAAAATTACGTGTGGCAGAGCTTTGATTACCCATTTGATACTCTGTTACCGGGGATGAAGCTCGGGTGGGACTTGAAAACAGGTTTAAACCGAAAGTTAATATCAAGGAGAAGTCAAATGGATCTATCTTCAGGAAAACTCAGCTATGGGATTAACACAGACGGGCTTCCTCAACTTATGGTTCGTGAAGGAAACAAGACAATGTTTAGAGGGTGGCCATGGTTTGGGGATGGTTTTAGGCGGAGTCGGTCACAAGAGGCAAATTTCGTGTATAATACTTCACTTGAGATATCATTTTCATATAGCAACGATCCAGATAATGAGCCTTCAAGAGTTGTGTTGGATTCAAGTGGGTTTGTTGTACACTATGTGTGGAGCAAAGGGGAAGAAAATTGGCACTCATCTTACACGTTTGAAGGATCTGGGTGCAACAGCTATGAATTATGTGGGAATTTTGGTCTCTGTAGCTCTGTTTTAGTAGCAAGTTGTGGTTGTTTAGATGGGTTTGAACGAAAGCCAAACCAAATTTTTTCAGATGGGTGTGTGAGAAAGGATCTAGAAACCTGCAGAAAAGGAGTGGGATTTAGAAAGATAAGTAATGTGAAATGGCCAGATTCAAGTGGGGAGTTTGTGAAAATCAAATTGGGCACTCAAAATTGCGAGAAAGAGTGTTTGAATAATTGTTCTTGCTTGGCTTATGGTGCATTGGAAATTCCAGGGATTGGGGCTTCCTGTGTCAACTGGTTTGGGAAATTGATTGATATTAGATTTAATCGTGATGCTGGAACTGGAGAAGATCTGTTTGTGAGAGTAGCCGCTTCAGAATTAGAATCAAGTAACAAGAAGAGTGGAGTTGCGGTGGTTGTAGCAATGGTAATCATATCAATACTAATCTTCTTGGCTTTAATCAGCTGGTTTATCATCAGGAGAATAAGAAGAAGTGCAAGAGGAATTTTAGAGAAAGGAGCTGTGATGATTGAAGCTCTAATTGAAGAAAATGAACTTGAAATGCCAATTGGATTAATAGAAGGAGCAACAGATCATTTTTCCATTTCCAATAAGATAGGAGAAGGAGGTTTTGGGCCAGTTTATAAGGGAAAACTCCCATCTGGCCACGAAATTGCTGTTAAAAAACTAGCAGAAAGATCTCGTCAAGGAATACAAGAGTTTAAGAATGAGGTCCTTTTCATTTCCCAACTTCAACATCGAAATCTTGTCAAACTTCTTGGCTTTTGCATCCACCAAGAAGAAATATTACTCATTTATGAATACATGCCAAACAAAAGCTTGGACTACTTCCTTTTTGATGAACGAAGACGTTCGTTACTCAATTGGCCAATGAGGATTGATATCATAGTTGGTATAGCTCGAGGACTTCTTTATCTCCATCGAGATTCAAGACTTCGAATAATACATAGGGATCTTAAAGCTGCCAATATTTTATTAGATAGTGAAATGAAGCCAAAGATCTCAGACTTCGGCATTGCACGGATGTTTGGTGAAGATCAAACTGAAACAAAAACAAGAAGAGTTGTTGGGACTTTTGGCTATATGTCTCCGGAATACGTAATAGATGGCTGCTTTTCATTCAAATCCGATGTTTTCAGCTTTGGAGTTATGCTTTTAGAAATAGTTAGTGGTAAAAAGAACCAACATTTTTTTCACTCTGAACATCATCAACTAAATCTTCTTGGACATGTGTGGAAACTTTGGAATGCAGGAAGGGCATTGGAATTTATAGATGAGACATTGAGAGATCAGATTGAAGAAAATGAAGCACTAAAATACATAAATATTGGACTTTTATGTATTCAAGGACGTCCAGAGAAAAGACCAACTATGTCATCTGTGCTTTCCATGTTAGAGAATGATAACATGGAATTCATATCTCCAGGGCGACCAGGATTCTTCGAAGAAGGATTTGAATGGTTTGATGCTGATAGTTCACCACCACTAGATGTTAAATTAACTTCTAGTTCAAACAATGTTGTTACTGTTACCTTATTTGATGGTCGATAA 2391 38.27 MFLKQSVAVDTLKAGQFINDTQFIVSATQKFALGFFTEPKSSNFKYLGIWYKKIPDVVVWVANRDNPIINSSATLNINGDGSLVLVNQTGQAFWFSNSSRSVKNAIAQLLDTGNFVLRDSNSESENYVWQSFDYPFDTLLPGMKLGWDLKTGLNRKLISRRSQMDLSSGKLSYGINTDGLPQLMVREGNKTMFRGWPWFGDGFRRSRSQEANFVYNTSLEISFSYSNDPDNEPSRVVLDSSGFVVHYVWSKGEENWHSSYTFEGSGCNSYELCGNFGLCSSVLVASCGCLDGFERKPNQIFSDGCVRKDLETCRKGVGFRKISNVKWPDSSGEFVKIKLGTQNCEKECLNNCSCLAYGALEIPGIGASCVNWFGKLIDIRFNRDAGTGEDLFVRVAASELESSNKKSGVAVVVAMVIISILIFLALISWFIIRRIRRSARGILEKGAVMIEALIEENELEMPIGLIEGATDHFSISNKIGEGGFGPVYKGKLPSGHEIAVKKLAERSRQGIQEFKNEVLFISQLQHRNLVKLLGFCIHQEEILLIYEYMPNKSLDYFLFDERRRSLLNWPMRIDIIVGIARGLLYLHRDSRLRIIHRDLKAANILLDSEMKPKISDFGIARMFGEDQTETKTRRVVGTFGYMSPEYVIDGCFSFKSDVFSFGVMLLEIVSGKKNQHFFHSEHHQLNLLGHVWKLWNAGRALEFIDETLRDQIEENEALKYINIGLLCIQGRPEKRPTMSSVLSMLENDNMEFISPGRPGFFEEGFEWFDADSSPPLDVKLTSSSNNVVTVTLFDGR* 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15163041 15166092 + Chy12G215900.1 Chy12g00990 238771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00990 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 160 IPR036426 -
Chy12g00990 796 Pfam Protein tyrosine and serine/threonine kinase 475 745 IPR001245 GO:0004672|GO:0006468
Chy12g00990 796 ProSiteProfiles Protein kinase domain profile. 473 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00990 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
Chy12g00990 796 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 793 - -
Chy12g00990 796 SMART ntp_6 314 395 IPR003609 -
Chy12g00990 796 Pfam PAN-like domain 313 379 IPR003609 -
Chy12g00990 796 SMART blect_4 9 135 IPR001480 -
Chy12g00990 796 SUPERFAMILY Protein kinase-like (PK-like) 463 771 IPR011009 -
Chy12g00990 796 Gene3D Transferase(Phosphotransferase) domain 1 549 754 - -
Chy12g00990 796 ProSiteProfiles Bulb-type lectin domain profile. 9 130 IPR001480 -
Chy12g00990 796 CDD B_lectin 16 135 IPR001480 -
Chy12g00990 796 Gene3D Phosphorylase Kinase; domain 1 438 548 - -
Chy12g00990 796 Pfam D-mannose binding lectin 58 161 IPR001480 -
Chy12g00990 796 PIRSF SRK 1 796 IPR024171 GO:0004674
Chy12g00990 796 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 5 793 - -
Chy12g00990 796 Pfam S-locus glycoprotein domain 190 296 IPR000858 GO:0048544
Chy12g00990 796 CDD PAN_AP_plant 312 396 - -
Chy12g00990 796 CDD STKc_IRAK 479 747 - -
Chy12g00990 796 SMART serkin_6 473 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00990 796 Gene3D - 4 132 IPR036426 -
Chy12g00990 796 ProSiteProfiles PAN/Apple domain profile. 313 396 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00988 Chy-Chr12:15155654 Chy12g00990 Chy-Chr12:15163041 0 dispersed
Chy12g00990 Chy-Chr12:15163041 Chy12g00999 Chy-Chr12:15218140 0 dispersed
Chy12g00992 Chy-Chr12:15178801 Chy12g00990 Chy-Chr12:15163041 2.91E-119 dispersed
Chy12g00989 Chy-Chr12:15160245 Chy12g00990 Chy-Chr12:15163041 2.76E-31 tandem
Chy12g00990 Chy-Chr12:15163041 Chy12g00991 Chy-Chr12:15168150 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71622 PF07714 PK_Tyr_Ser-Thr 9.20E-52 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00990 - - csv:105434442 1422.53