Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00995 ATGACCATGGCTCTTTTGTCAAGAAAATCATTGGCAATTGATAGCATAAAAGCAGGGGAATCCATCAATGGAAATACCCAGATTTTAGTTTCAACTCAACAGAAGTTTGTGCTGGGAATTTTCAATCCTAAAGACTCCAAAAATGGTTACTTGGGAATATGGTACAAGAACATCCCACAAACAGTTGTGTGGGTAGCAAACAGAGATAACCCACTTGTAAACTCGTCTGCCAGATTAACACTCGAAGGACAAAGCCTGGTTCTTGAGAATGAAAGCGATGGAATTCTATGGTCTTCCACTTCTTCAAAACTCCTGAAAGATCCAATAGCTCAACTACTTGATAATGGTAATTTGGTTATAAGAGAATCTGGGTCTGAACATTATGTGTGGCAGAGTTTTGACTACCCTTCTGATAATCTGTTACCTGGCATGAAAGTGGGATGGGACTTGAAAACCAGGATGAAATGGAAGTTAACGTCATGGAAAAGCTCGAATGATCCGTCTTCAGGGGATTTCACATATGGTATGGACCCTGGTGGGCTTCCCCAGCTTGAAACTCGCAGAGGAAATGTAACAACATACAGGGGTGGCCCATGGTTCGGTAGGAGGTTTAGTGGCACTACCCCTTTCAGAGATACAGCTATTCATTCTCCACGGTTCAATTATAGTGCGGAAGGAGCATTCTATTCATACGAGTCTGCAAAAGATCTTACTGTAAGATATGCACTGAGCGAAGAAGGGAAATTCGAACAATTTTATTGGATGGATGATGTAAATGATTGGTACCTTCTGTATGAATTACCGGGAGATGCCTGCGATTACTACGGACTCTGCGGAAATTTTGGTATTTGTACATTTTCCACCATACCGCGCTGCGATTGCATCCATGGGTATCAACCAAAATCGCCAGACGATTGGAATAAGCGTCGCTGGATTAGAGGCTGCGTTATAAGGGACAATCAAACCTGCAAAAATGGAGAGGGGTTTAAAAGAATCAGCAATGTGAAATTGCCAGATTCTTCAGGGGATTTGGTGAATGTTAATATGAGCATTCATGACTGCAAAGCGGCGTGCTTGAGTAATTGCTCTTGCTTGGCCTATGGAATAATGGAGCTTTCCACTGGAGGATGTGGTTGCCTCACATGGTATAAGAAGTTGGTGGATATTAGAATCCTTCCTGATAATGGACAGGATATCTATGTGAGGTTGGCTGCTTCAGAATTAGATTCGGATAACAGGAAGCTTATAGTTGTGCTTTGTCTTTCTGTTGCTTCACTCATAAGCTTCTTCATTTTTGTTGCTTGCTTTATCTTTTGGCGTAGAAGGACGATTAAGGGTAATGAGGTTCAGTCTCATGAAAACGAAGCTGAGATGCCACTTTATGATTTTTCCATGCTTGTAAATGCCACAAATGATTTTTCTCTCTCAAATAAGATTGGCGAAGGTGGTTTCGGTCCCGTCTACAAAGGAGTGCTTCCATGTGGACAAGAAATTGCAGTAAAAAGACAGGCAGAGGGTTCAAGCCAAGGGCAAACCGAGCTAAGAAACGAGGTTCTATTGATCTCCAAACTCCAACATCGTAATCTTGTCAAGCTGCTTGGTTTTTGCATTCATCAACAAGAAACAATGCTGGTCTATGAATATATGCCCAACAAAAGTCTTGACTATTTTCTCTTTGATAACAAGAAGAGATCTTTACTTAATTGGAAAAAGAGGTTGGATATTATAATTGGAATAGCTCGAGGTCTTCTCTATCTCCACCGAGATTCGAGGCTAATAATTATACATAGGGATCTCAAAGTGAGTAACATCTTACTGGATAACGAAATGAATCCAAAAATTTCAGATTTTGGTATGGCTCGCATGTTTGGTGAAGACCAAACTATGACACGAACCAAAAGAGTTGTTGGGACCTACGGCTATATGTCTCCTGAATATGCAATCGACGGATATTTTTCAATGAAATCAGATATTTTCAGCTTTGGAGTTATTCTTTTAGAAATAGTTAGTGGTAAGAAGAATAGAGGCTTCTTCCATCCCGACCATCAACTAAATCTTCTTGGACATGCATGGAAACTGTGGGATGAAGGCAATGGTTTGGAATTAATGGATGAAACATTGAAAGATCAGTTCCAAAAGTGTGAAGCAGTACGATGCATTCAAGTAGGACTACTGTGCGTTCAAGAGAATCCTGATGAAAGACCAGCCATGTGGTCAGTACTGTCAATGTTAGAGAGTGAAAATATGGCTTCCAAATTTAAATATTTGGGAATATGGTACAAGAACATCCCACAGAGGACTATCGTATGGGTTGCAAACACAGACAACCCATTTGTAAGTTCCTCTGCCAAATTAACATTCAATGAAGAAGGAAACGTTATTCTTGTCGATGAAAAAGATGGAGTTTTATGGTCTTCCACTTCTTCAGTATACGTGAAAGAACCGGTCGCTCAACTTCTAGATAACGGTAACTTGGTATTAGAAGAATCTGGGTCTGAAAATTATGTGTGGCAGAGTTTCGATTATGTCTCTGATACTCTGTTACCCGGCATGAAACTTGGTCGGGACTTGAAAACTGATATGACCTGGAAGTTAACGTCATGGAAAAGCCAAAACGATCCCTCCTCTGGGGATTTCACTTATGTTATGGACCCTGGTGGGCTTCCCCAGCTTGAAATTCACAGAGGAAACGTCACAAAGTACAGGAGCGGCCCCTGGTTGGGTAGTAGGTTTAGTGGCGGTTACTACCTTAGAGAAACGGCAATTATCACTCCACGGTTCGTTAATAATTCGGATGAAGCATTCTATTCATACGAGTCTGCTAAAAATCTCACTGTCAGATATACACTGAACGCAGAAGGCTACTTCAACCTATTTTATTGGAACGATGATGGAAATTATTGGCAGACTATCTGCGATTGCATTCCTGGGTTTCAACCAAATTCGCCAGATGATTGGGAAAAGCAAGGCACCTCTGGTGGGTGCTTTAGAAGGGACAATAAGACCTGCAAAAATGGAGAGGGGTTTAAAAGAATCAGCAATGTGAAATTACCAGATTCTTCTGCGAAGAATTTGGTTAAGGTTAACACAAGCATTCAAGACTGCAAAGCGGCGTGCTTGAGTGATTGCTCTTGCTTGGCCTATGGAAGGATGGAGTTTTCCACAGGAGACAATGGCTGCATCATATGGTTTGAGAGATTGGTGGATATGAAAATCCTTCCTCAATATGGACAGGATATCTATGTAAGGTTGGCTGCTTCAGAATTAGAATCGCCTAAAAGGAAGCAGCTTATAGTTGGGCTGAGCGTGTCTGTTGCGTCACTGATAAGCTTCTTGATTTTGGTTGCTTGCTTTATCTATTGGCGTAAAAGGAGGAGGGTTGAGGGTAATGAGGTTGAGGCTCAAGAGGACGAAGTTGAATTGCCACTCTATGATTTTGCGAAGATTGAGACTGCCACGAATTATTTTTCTTTTTCAAATAAGATTGGCGAAGGGAATGCTTCGATGTGGACAAGAGATTGCAGTAAAAAGACTGGCAGAGGGTCAAGCCAAGGGCAAACCGAGCTAAGAAACGAGGTTCTATTGATCTCCAAACTCCAACATCGTAATCTCGTCAAGCTACTTGTTTGGAAACTAACTCGAAAGTTGTGGTGGGATCACCAGGCATGGAAACTTTCGGAAGAAGGCAATGCTTTGGAATTAATAGATGAAACATTGAAAGATGGATTCCAAAACTCTGAAGCCCAGCGATACATTCAAGTAGGACTGTTGTGCGTTCAAGAGAATCCTGATGAAAGGCCAGCTATGTGGTCCGTACTTTCAATGTTAGAGAGTGAAAATATGGAATTATTATCAGTGACCGTTACACTGCTGTATGGTCAGTTTCGATTATCCCTCCGATACTCTGTTACCTGGCATGTAACTGGGGTGGGACTTGAAAAGCGGCCTGAACAGGAAGTTAACGAGATGGCTGCCAAGACTATGGACACTGTGGGAATTTTTGTGTTTATTCATTGTCCTTCACTTCACAATGCGCTTGTCTGGCTGGGTTTGTACCACAATCCCCCCAAGATTGGGGTAAGTTTGTCTGGTCGGATGGCTGCATCAGAAGGGACGAACAAACGTCCAGAAATGGATGGGGATTTTTAA 4149 41.82 MTMALLSRKSLAIDSIKAGESINGNTQILVSTQQKFVLGIFNPKDSKNGYLGIWYKNIPQTVVWVANRDNPLVNSSARLTLEGQSLVLENESDGILWSSTSSKLLKDPIAQLLDNGNLVIRESGSEHYVWQSFDYPSDNLLPGMKVGWDLKTRMKWKLTSWKSSNDPSSGDFTYGMDPGGLPQLETRRGNVTTYRGGPWFGRRFSGTTPFRDTAIHSPRFNYSAEGAFYSYESAKDLTVRYALSEEGKFEQFYWMDDVNDWYLLYELPGDACDYYGLCGNFGICTFSTIPRCDCIHGYQPKSPDDWNKRRWIRGCVIRDNQTCKNGEGFKRISNVKLPDSSGDLVNVNMSIHDCKAACLSNCSCLAYGIMELSTGGCGCLTWYKKLVDIRILPDNGQDIYVRLAASELDSDNRKLIVVLCLSVASLISFFIFVACFIFWRRRTIKGNEVQSHENEAEMPLYDFSMLVNATNDFSLSNKIGEGGFGPVYKGVLPCGQEIAVKRQAEGSSQGQTELRNEVLLISKLQHRNLVKLLGFCIHQQETMLVYEYMPNKSLDYFLFDNKKRSLLNWKKRLDIIIGIARGLLYLHRDSRLIIIHRDLKVSNILLDNEMNPKISDFGMARMFGEDQTMTRTKRVVGTYGYMSPEYAIDGYFSMKSDIFSFGVILLEIVSGKKNRGFFHPDHQLNLLGHAWKLWDEGNGLELMDETLKDQFQKCEAVRCIQVGLLCVQENPDERPAMWSVLSMLESENMASKFKYLGIWYKNIPQRTIVWVANTDNPFVSSSAKLTFNEEGNVILVDEKDGVLWSSTSSVYVKEPVAQLLDNGNLVLEESGSENYVWQSFDYVSDTLLPGMKLGRDLKTDMTWKLTSWKSQNDPSSGDFTYVMDPGGLPQLEIHRGNVTKYRSGPWLGSRFSGGYYLRETAIITPRFVNNSDEAFYSYESAKNLTVRYTLNAEGYFNLFYWNDDGNYWQTICDCIPGFQPNSPDDWEKQGTSGGCFRRDNKTCKNGEGFKRISNVKLPDSSAKNLVKVNTSIQDCKAACLSDCSCLAYGRMEFSTGDNGCIIWFERLVDMKILPQYGQDIYVRLAASELESPKRKQLIVGLSVSVASLISFLILVACFIYWRKRRRVEGNEVEAQEDEVELPLYDFAKIETATNYFSFSNKIGEGNASMWTRDCSKKTGRGSSQGQTELRNEVLLISKLQHRNLVKLLVWKLTRKLWWDHQAWKLSEEGNALELIDETLKDGFQNSEAQRYIQVGLLCVQENPDERPAMWSVLSMLESENMELLSVTVTLLYGQFRLSLRYSVTWHVTGVGLEKRPEQEVNEMAAKTMDTVGIFVFIHCPSLHNALVWLGLYHNPPKIGVSLSGRMAASEGTNKRPEMDGDF* 1383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15188449 15200208 + Chy12G215950.1 Chy12g00995 238776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00995 1382 Pfam Protein tyrosine and serine/threonine kinase 474 742 IPR001245 GO:0004672|GO:0006468
Chy12g00995 1382 ProSiteProfiles PAN/Apple domain profile. 1003 1085 IPR003609 -
Chy12g00995 1382 ProSiteProfiles Protein kinase domain profile. 473 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00995 1382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
Chy12g00995 1382 ProSiteProfiles EGF-like domain profile. 268 304 IPR000742 -
Chy12g00995 1382 Gene3D Transferase(Phosphotransferase) domain 1 549 755 - -
Chy12g00995 1382 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 750 964 - -
Chy12g00995 1382 SUPERFAMILY Protein kinase-like (PK-like) 1142 1214 IPR011009 -
Chy12g00995 1382 Pfam D-mannose binding lectin 767 869 IPR001480 -
Chy12g00995 1382 Pfam D-mannose binding lectin 61 162 IPR001480 -
Chy12g00995 1382 SUPERFAMILY Protein kinase-like (PK-like) 453 745 IPR011009 -
Chy12g00995 1382 Gene3D Phosphorylase Kinase; domain 1 436 548 - -
Chy12g00995 1382 Gene3D Transferase(Phosphotransferase) domain 1 1211 1287 - -
Chy12g00995 1382 Gene3D Hepatocyte Growth Factor 999 1084 - -
Chy12g00995 1382 CDD PAN_AP_plant 320 404 - -
Chy12g00995 1382 SMART ntp_6 324 403 IPR003609 -
Chy12g00995 1382 SMART ntp_6 1004 1084 IPR003609 -
Chy12g00995 1382 ProSiteProfiles Bulb-type lectin domain profile. 722 840 IPR001480 -
Chy12g00995 1382 Pfam S-locus glycoprotein domain 194 302 IPR000858 GO:0048544
Chy12g00995 1382 Pfam S-locus glycoprotein domain 901 1011 IPR000858 GO:0048544
Chy12g00995 1382 Gene3D - 756 888 - -
Chy12g00995 1382 SMART serkin_6 473 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00995 1382 CDD B_lectin 22 136 IPR001480 -
Chy12g00995 1382 Pfam PAN-like domain 1003 1070 IPR003609 -
Chy12g00995 1382 Pfam PAN-like domain 323 389 IPR003609 -
Chy12g00995 1382 CDD PAN_AP_plant 1000 1085 - -
Chy12g00995 1382 CDD STKc_IRAK 479 745 - -
Chy12g00995 1382 Gene3D Phosphorylase Kinase; domain 1 1130 1210 - -
Chy12g00995 1382 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 750 964 - -
Chy12g00995 1382 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 167 IPR036426 -
Chy12g00995 1382 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1215 1292 - -
Chy12g00995 1382 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 749 - -
Chy12g00995 1382 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 970 1209 - -
Chy12g00995 1382 SUPERFAMILY alpha-D-mannose-specific plant lectins 768 874 IPR036426 -
Chy12g00995 1382 ProSiteProfiles Bulb-type lectin domain profile. 13 133 IPR001480 -
Chy12g00995 1382 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1215 1292 - -
Chy12g00995 1382 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 970 1209 - -
Chy12g00995 1382 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 9 749 - -
Chy12g00995 1382 ProSiteProfiles PAN/Apple domain profile. 323 404 IPR003609 -
Chy12g00995 1382 SMART blect_4 20 136 IPR001480 -
Chy12g00995 1382 SMART blect_4 729 843 IPR001480 -
Chy12g00995 1382 Gene3D - 9 133 IPR036426 -
Chy12g00995 1382 CDD B_lectin 755 842 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01995 Chy-Chr11:25838572 Chy12g00995 Chy-Chr12:15188449 4.89E-14 dispersed
Chy12g00995 Chy-Chr12:15188449 Chy12g00999 Chy-Chr12:15218140 2.01E-19 dispersed
Chy12g00997 Chy-Chr12:15206809 Chy12g00995 Chy-Chr12:15188449 2.73E-71 dispersed
Chy12g00998 Chy-Chr12:15211927 Chy12g00995 Chy-Chr12:15188449 7.88E-29 dispersed
Chy12g01002 Chy-Chr12:15246395 Chy12g00995 Chy-Chr12:15188449 8.43E-12 dispersed
Chy12g00994 Chy-Chr12:15185240 Chy12g00995 Chy-Chr12:15188449 1.94E-09 tandem
Chy12g00995 Chy-Chr12:15188449 Chy12g00996 Chy-Chr12:15205560 1.48E-70 tandem
Chy12g00995 Chy-Chr12:15188449 Chy02g00355 Chy-Chr2:2288731 8.09E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71624 PF07714 PK_Tyr_Ser-Thr 2.80E-47 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00995 - - csv:105435152 1499.95