Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00999 ATGGGAGAACGGATTGGCAGGTGCAGTAAGGCTTCAGCTTTTTTAATTTTTTTGACAACCATAGCTCTGTTTTCAAGAAAATTATCAGCAATCGATACAATAAAAGAAGGGGAATTGTTAAGCGGCAGCACCGAGATATTAGTTTCATCTCAACAGAACTTTGTATTGGGAATCTTCAATTCCCAAGGCTCCAAATTTCAGTACTTAGGAATATGGTACAAGAACAACCCACAGACAATCGTATGGGTAGCAAACAGAGACAACCCACTTGTAAACTCCTCTGCCAAATTAACAGTCAACGTAAAAGGAAGTATCAGGCTTCTCAACGAAACAGGTGGAGTTTTATGGTCTTCCCCGTCTCTAGGATTCAGGAAACTACCCATCGTTCAGCTGCTAAACACAGGTAATCTGGTCGTAACCGAATCTGGGTCACAGAATTATTTGTGGCAGAGTTTTGATTACCCATCTGATACTCTGTTAACGGGAATGAAACTGGGTTGGGACTTGAAATCCGGTCTAAACCGGAAGTTAACGTCTTGGAAAAGCTCAAACGATCCGTCATCTGGGGGTTTCACCTACAGCGTTGAAACAGATGGGCTTCCCCAATTTGTAATTCGCGAAGGACCTATCATACTCTTTCGAGGTGGCCCTTGGTACGGCAATAGGTTTAGTGGAAGTGGTCCACTCAGAGATACCGCTATTTATTCCCCGAAGTTCGATTATAATGCCACCGCAGCTTTATTTTCATATGATGCTGCGGATAATCTCTTTGTGAGACTTACACTGAACGCGGCTGGGAATGTTCAACAGTTTTATTGGGTCGATGATGGAAAATATTGGAACCCTTTGTATACAATGCCGGGAGATCGATGCGATGTTTATGGACTGTGTGGGGATTTTGGTGTTTGTACGTTTTCACTCACAGCAGAATGTGCTTGTATGGTTGGGTTTGAACCCAAGTCACCTAATGATTGGGAAAGGTTTAGATGGTCTGATGGGTGCGTTAGAAAGGACAATCGAACCTGTAGAAATGGAGAGGGGTTTAAAAGAATCAGTAGTGTGAAATTGCCAGATTCCTCAGGGTATTTGGTGAATGTTAATACAAGCATTGATGATTGTGAGGCGTCGTGTTTAAACAACTGCTCTTGCTTGGCTTATGGAATAATGGAGCTTCCAACAGGCGGCTATGGCTGTGTTACTTGGTTTCATAAACTGGTGGATGTTAAATTCGTTCTTGAAAATGGACAGGATCTCTATATAAGAGTGGCAGCTTCAGAACTAGACACGACCAAGAAGAAGCTTTTGGTTGCAATTTGTGTGTCTGTGGCTTCATTTCTAGGCTTGTTGGCTTTTGTCATTTGCTTTATCCTTGGGCGTCGAAGGAGAGTTAGAGATAATATGGTCTCTCCTGATAACTCTGAAGGTCATATTCAATCTCAAGAAAACGAAGTGGAGCCACTCTTTGATTTTACCACAATCGAGATAGCAACGAATGGTTTTTCTTTTTCGAATAAGATAGGGGAAGGTGGTTTTGGTCCTGTATACAAGGGAAAGCTTTCTTTTGGACAAGAGATTGCAGTGAAGAGACTTGCAGAGGGCTCTGGCCAAGGCCAAAGTGAGTTCAAAAATGAGGTTTTGTTGATTTCACAACTTCAGCATCGAAATCTTGTAAAGCTTCTTGGTTTCTGCATTCACCAAGAAGAAACATTGCTGGTCTATGAGTATATGCAAAACAAAAGTCTAGACTACTTCCTCTTCGATAATCAGAGGCGATGTTTACTCAATTGGCAAAAGAGATTGGATATCATTATCGGGATAGCTCGAGGACTTCTTTATCTTCATAGAGATTCAAGGCTTAGAATAATACACAGGGATCTCAAAGTAAGTAATATATTACTTGACAATGAAATGACTCCAAAAATTTCAGACTTTGGTATGGCACGCATGTTTGGAGAAGGTCAAACTGTGACACAAACTAAAAGAGTTGTTGGGACCTATGGTTATATGTCTCCAGAATATGCACTCGACGGATGTTTTTCATTGAAATCAGATGTATTTAGCTTTGGAGTAATTCTATTGGAAATAGTCAGTGGTAAAAAGAACAGAGGCTTCTTCCATACAGATCATCAACTAAATCTTCTTGGACATGCTTGGAAGCTTTGGGATGAACAAAATGCTCTGGAGTTAATGGATGTATCATTGGAGGATGAATTCCAACCTTCTGAAGCCTTGCAATGCATTCAAGTAGGACTTTTGTGTGTTCAACAGAATCCTGATGAAAGGCCGACTATGTGGTCAGTACTTTCAATGTTGGAGGGTGAGAACGTGCTCCTATCTCATCCTAAACAACCTGGATTTTACATGGAAAGAATGTTCTCTAAGCATGATAAATTATCGGCCGAAACCTCAACTTCGAATGAAGTGACAGTTACATCGATCCGTGGTCGTTAG 2451 41.17 MGERIGRCSKASAFLIFLTTIALFSRKLSAIDTIKEGELLSGSTEILVSSQQNFVLGIFNSQGSKFQYLGIWYKNNPQTIVWVANRDNPLVNSSAKLTVNVKGSIRLLNETGGVLWSSPSLGFRKLPIVQLLNTGNLVVTESGSQNYLWQSFDYPSDTLLTGMKLGWDLKSGLNRKLTSWKSSNDPSSGGFTYSVETDGLPQFVIREGPIILFRGGPWYGNRFSGSGPLRDTAIYSPKFDYNATAALFSYDAADNLFVRLTLNAAGNVQQFYWVDDGKYWNPLYTMPGDRCDVYGLCGDFGVCTFSLTAECACMVGFEPKSPNDWERFRWSDGCVRKDNRTCRNGEGFKRISSVKLPDSSGYLVNVNTSIDDCEASCLNNCSCLAYGIMELPTGGYGCVTWFHKLVDVKFVLENGQDLYIRVAASELDTTKKKLLVAICVSVASFLGLLAFVICFILGRRRRVRDNMVSPDNSEGHIQSQENEVEPLFDFTTIEIATNGFSFSNKIGEGGFGPVYKGKLSFGQEIAVKRLAEGSGQGQSEFKNEVLLISQLQHRNLVKLLGFCIHQEETLLVYEYMQNKSLDYFLFDNQRRCLLNWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMTPKISDFGMARMFGEGQTVTQTKRVVGTYGYMSPEYALDGCFSLKSDVFSFGVILLEIVSGKKNRGFFHTDHQLNLLGHAWKLWDEQNALELMDVSLEDEFQPSEALQCIQVGLLCVQQNPDERPTMWSVLSMLEGENVLLSHPKQPGFYMERMFSKHDKLSAETSTSNEVTVTSIRGR* 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15218140 15221322 + Chy12G215990.1 Chy12g00999 238780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00999 816 Pfam D-mannose binding lectin 79 181 IPR001480 -
Chy12g00999 816 SUPERFAMILY Protein kinase-like (PK-like) 485 791 IPR011009 -
Chy12g00999 816 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
Chy12g00999 816 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544
Chy12g00999 816 Pfam PAN-like domain 342 408 IPR003609 -
Chy12g00999 816 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 23 812 - -
Chy12g00999 816 SMART ntp_6 343 422 IPR003609 -
Chy12g00999 816 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 812 - -
Chy12g00999 816 CDD PAN_AP_plant 339 423 - -
Chy12g00999 816 SMART serkin_6 500 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00999 816 Gene3D Phosphorylase Kinase; domain 1 463 575 - -
Chy12g00999 816 Gene3D - 27 152 IPR036426 -
Chy12g00999 816 ProSiteProfiles Protein kinase domain profile. 500 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00999 816 PIRSF SRK 6 816 IPR024171 GO:0004674
Chy12g00999 816 SMART blect_4 38 155 IPR001480 -
Chy12g00999 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 186 IPR036426 -
Chy12g00999 816 CDD B_lectin 39 155 IPR001480 -
Chy12g00999 816 Pfam Protein tyrosine and serine/threonine kinase 501 770 IPR001245 GO:0004672|GO:0006468
Chy12g00999 816 Gene3D Transferase(Phosphotransferase) domain 1 576 780 - -
Chy12g00999 816 CDD STKc_IRAK 506 773 - -
Chy12g00999 816 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Chy12g00999 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00612 Chy-Chr4:6894298 Chy12g00999 Chy-Chr12:15218140 0 dispersed
Chy04g00613 Chy-Chr4:6919317 Chy12g00999 Chy-Chr12:15218140 0 dispersed
Chy12g00990 Chy-Chr12:15163041 Chy12g00999 Chy-Chr12:15218140 0 dispersed
Chy12g00991 Chy-Chr12:15168150 Chy12g00999 Chy-Chr12:15218140 0 dispersed
Chy12g00993 Chy-Chr12:15183952 Chy12g00999 Chy-Chr12:15218140 0 dispersed
Chy12g00995 Chy-Chr12:15188449 Chy12g00999 Chy-Chr12:15218140 2.01E-19 dispersed
Chy12g00996 Chy-Chr12:15205560 Chy12g00999 Chy-Chr12:15218140 2.06E-80 dispersed
Chy12g00999 Chy-Chr12:15218140 Chy12g01001 Chy-Chr12:15238960 0 dispersed
Chy12g00998 Chy-Chr12:15211927 Chy12g00999 Chy-Chr12:15218140 3.38E-84 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71626 PF07714 PK_Tyr_Ser-Thr 2.80E-49 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00999 - - csv:105434439 1626.3