Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01001 ATGAATCCTCTTCTTCCTCAACGGCCCGTCTTCCTCATTTCTTTGTTTTTCGTAATTTTTGTTGGCACCACCCATTTTAGCTTTGGGCTTCACATCAATTCCAATTCCACAATTCAAATCATTAAAGATGGAGATCGCTTGGTATCCACCAACAAAAGATTCGCACTTGGGTTCTTCAATTTCAACAATTCCACCACTCGCCGATATGTCGGAATTTGGTATAATCAAATTCCCCAATTAACCCTCGTTTGGGTTGCCAACAGAAACCACCCCCTTAACGACACTTCAGGAACCTTAGCCCTCGACCTTCATGGAAACGTCATCGTTTTCACCCCGACGCAAACCATATCTCTTTGGTCTACTAACACTACCGTCCCATCAAACGACGACGTGTCGATTCAGCTTTCCAATACAGGAAATCTCGCCCTGATTCAACCACAAACCCAGAGGGTTATATGGCAGAGCTTTGATTATCCATCTAATGTCTTTCTTCCCTACATGAAACTAGGAGTGAACCGTCGGACCGGGTTGAGTTGGTTTCTAACTTCATGGAAGTCGCTCGATGATCCAGGAACCGGGAACTTTACTAGCCGGATTGACCCCACCGGGTACCCCCAGCTGATTTTATACGACGGGAAGGTTCCACGGTGGCGAGCAGGGCCATGGACAGGAAGAAGATGGTCCGGAGTACCTGAAATGACAAGGTCGTTTATAATCAACACATCCTATGTCGACAACAGTGAAGAAGTTTCCCTAACAAACGGTGTAACAGTCGACACAGTTTTAATGAGAATGACTCTAGACGAATCCGGTTTGGTTCATCGGTCCACATGGAACCAACATGAGAAAAAGTGGAACGAATTTTGGTCAGCTCCAATTGAATGGTGTGATACCTACAACCGGTGCGGTTTGAACAGTAATTGCGACCCATACGACGCGGAGCAGTTCCAGTGCAAGTGCCTACCTGGATTCAAACCACGATCGGAAGAGAATTGGTTCTATAGAGATGCGTCTGGTGGGTGCATCAGGAAGAGGTCGAACGCTACGTGTCGAGCTGGAGAAGGTTTTGTGAAGGTGGCACGTGTGAAGGTGCCAGATACATGGATAGCACATGTGGATAAGAATATGAGTTTAGAAGCGTGCGAACAGGCGTGTTTAAATAATTGTAACTGTACTGCTTACACAAGTGCAAATGAGATGACGGGGACAGGGTGCATGATGTGGCTTGGAGATTTGATCGACACGCGGACCTATGCCACCACTGGTCAAGATCTATATGTAAGAGTTGATGCTATTGAATTAGCTCAATATGCACAAAAATCAAAAACCCATCCAACAAAAAAGGTGATAGCCATTGTTGTGGTGTCTTTTGTTGCATTGGTGGTACTCGTGAGCTCGCTAATTTATTTCTGGGACGTGGTTAGAAAAAAAAAGGAGAGATCGAGGACTTTATCTTTTAACTTTATTGGAGAACCTCCAAATTTAAAGGAATTTGATGAAAGTAGAACAAGTTCAGATTTGCCTGTATTTGACTTGTTGACCATAGCAAAGGCAACTGACCATTTTTCATTTACTAACAAGCTTGGCGAAGGTGGCTTTGGTGCAGTTTATAAGGGAAAGCTTACAAATGGAGAGGAAATAGCAGTTAAGAGGTTGGCTAAGAATTCAGGGCAAGGAGTTGGAGAGTTCAGGAATGAAGTTAATTTAATTGCAAAGCTTCAGCATAGAAACCTTGTCAAAATCTTAGGTTACTGCGTTAAGAATGAAGAGAAAATGATTGTGTACGAATACTTGCCAAACAAGAGCTTGGACACGTACATCTTTGATGAAACCAAGAGTGGTTTGCTTGATTGGAAAAAACGTTTTGAAATTATATGTGGCATTGCACGAGGGATCTTATATCTTCACGAAGATTCTAGATTGAAAATTATTCATCGAGATTTGAAGGCAAGTAATATACTACTGGATGCTAATTTGAATCCCAAAATAGCAGATTTCGGTATGGCAAGAATATTTGGCCAAGATCAAATTCAAGCAAACACAAATCGTATTGTTGGAACATATGGATACATGTCACCGGAATATGCAATGGAAGGCCTATTTTCAGTGAAATCAGATATATATAGCTTTGGAGTTTTGGTGCTAGAGTTGATTACAGGGAAAAAGAATACCAACTACGATTCCTCCCACTTAAACTTGGTTGGACATGTTTGGGAGCTCTGGAAACTTGACAATGTAATGGAACTAGTGGACTCCAGTTTGGAAAAATCAGCAAGTTGTGGATACAAAATCATAATAAGATGCCTCCAAATTGGATTATTATGTGTTCAAGAGGATCCGACAGATCGTCCAACCATGTCAAATGTCATGTTCATGTTGGGGAATGAAGTGAGTCTTCCTTCTCCAAAGAAACCTGCTTTTATTTTAAAGAGAAAATACAACAGTGGAGATCCATCTACCAGTACAGAAGGAGCCAACTCTGTAAATGATCTAACAATTTCTATAATTCATGCTCGTTGA 2520 41.9 MNPLLPQRPVFLISLFFVIFVGTTHFSFGLHINSNSTIQIIKDGDRLVSTNKRFALGFFNFNNSTTRRYVGIWYNQIPQLTLVWVANRNHPLNDTSGTLALDLHGNVIVFTPTQTISLWSTNTTVPSNDDVSIQLSNTGNLALIQPQTQRVIWQSFDYPSNVFLPYMKLGVNRRTGLSWFLTSWKSLDDPGTGNFTSRIDPTGYPQLILYDGKVPRWRAGPWTGRRWSGVPEMTRSFIINTSYVDNSEEVSLTNGVTVDTVLMRMTLDESGLVHRSTWNQHEKKWNEFWSAPIEWCDTYNRCGLNSNCDPYDAEQFQCKCLPGFKPRSEENWFYRDASGGCIRKRSNATCRAGEGFVKVARVKVPDTWIAHVDKNMSLEACEQACLNNCNCTAYTSANEMTGTGCMMWLGDLIDTRTYATTGQDLYVRVDAIELAQYAQKSKTHPTKKVIAIVVVSFVALVVLVSSLIYFWDVVRKKKERSRTLSFNFIGEPPNLKEFDESRTSSDLPVFDLLTIAKATDHFSFTNKLGEGGFGAVYKGKLTNGEEIAVKRLAKNSGQGVGEFRNEVNLIAKLQHRNLVKILGYCVKNEEKMIVYEYLPNKSLDTYIFDETKSGLLDWKKRFEIICGIARGILYLHEDSRLKIIHRDLKASNILLDANLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDIYSFGVLVLELITGKKNTNYDSSHLNLVGHVWELWKLDNVMELVDSSLEKSASCGYKIIIRCLQIGLLCVQEDPTDRPTMSNVMFMLGNEVSLPSPKKPAFILKRKYNSGDPSTSTEGANSVNDLTISIIHAR* 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15238960 15242354 + Chy12G216010.1 Chy12g01001 238782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01001 839 Gene3D Phosphorylase Kinase; domain 1 496 597 - -
Chy12g01001 839 Pfam Protein tyrosine and serine/threonine kinase 523 790 IPR001245 GO:0004672|GO:0006468
Chy12g01001 839 CDD B_lectin 39 159 IPR001480 -
Chy12g01001 839 PANTHER - 23 836 - -
Chy12g01001 839 ProSiteProfiles Bulb-type lectin domain profile. 32 156 IPR001480 -
Chy12g01001 839 ProSiteProfiles PAN/Apple domain profile. 350 430 IPR003609 -
Chy12g01001 839 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 23 836 - -
Chy12g01001 839 Pfam Domain of unknown function (DUF3403) 795 839 IPR021820 GO:0004674
Chy12g01001 839 SMART blect_4 38 159 IPR001480 -
Chy12g01001 839 SMART ntp_6 351 429 IPR003609 -
Chy12g01001 839 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 190 IPR036426 -
Chy12g01001 839 PIRSF SRK 4 839 IPR024171 GO:0004674
Chy12g01001 839 Pfam PAN-like domain 350 415 IPR003609 -
Chy12g01001 839 Gene3D - 32 156 IPR036426 -
Chy12g01001 839 SMART serkin_6 522 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01001 839 Gene3D Transferase(Phosphotransferase) domain 1 598 800 - -
Chy12g01001 839 ProSiteProfiles Protein kinase domain profile. 522 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01001 839 ProSitePatterns Protein kinases ATP-binding region signature. 528 550 IPR017441 GO:0005524
Chy12g01001 839 ProSiteProfiles EGF-like domain profile. 292 330 IPR000742 -
Chy12g01001 839 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544
Chy12g01001 839 CDD PAN_AP_plant 351 429 - -
Chy12g01001 839 SUPERFAMILY Protein kinase-like (PK-like) 498 793 IPR011009 -
Chy12g01001 839 Pfam D-mannose binding lectin 81 185 IPR001480 -
Chy12g01001 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Chy12g01001 839 CDD STKc_IRAK 528 793 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00809 Chy-Chr9:10800686 Chy12g01001 Chy-Chr12:15238960 3.50E-82 dispersed
Chy12g00986 Chy-Chr12:15140058 Chy12g01001 Chy-Chr12:15238960 0 dispersed
Chy12g00999 Chy-Chr12:15218140 Chy12g01001 Chy-Chr12:15238960 0 dispersed
Chy12g01001 Chy-Chr12:15238960 Chy12g01003 Chy-Chr12:15254566 0 dispersed
Chy12g01001 Chy-Chr12:15238960 Chy12g01002 Chy-Chr12:15246395 9.04E-45 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71627 PF07714 PK_Tyr_Ser-Thr 2.40E-49 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01001 - - csv:116402676 1632.08