Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01003 ATGCATCCTCTTCCTCCTAAACCAGCCGTCTTCCTCATTTCATTGTTTTTGGTCATTTTTGTTGGAACTCATTTTAGCATTGCAATTGATACTTCAAATTCTACAATTCAAATCATCAAAGATGGAGATCACTTGGTATCCACCAACAAGAATTTCACTCTTGGATTCTTCAGTCTCAACAATTCCACCACTCCCCGATATGTCGGAATTTGGTACAGTCAAATTCCTCAACTAACCCTCGTTTGGGTTGCCAATAGAAACCAACCCCTTAACCACACCTCAGGAACCTTCGCCCTCGACCCCCATGGAAACGTTGTCCTTTTCACCCCCACACAAACCATATCTCTTTGGTCTACTAACACTACCATCCAATCAAACGACGATGTGTCCATTGAGCTTCAGAATACTGGAAATCTCGCCTTCATTGAACGACAGAGCCAAAAGGTTATATGGCAAAGCTTCGATTATCCATCTCATGTCTTTCTTCCCTACATGAAATTGGGGTTGAACCGGCAGACCGGGTTCAGCTGGTTCCTAACTTCATGGAAAGCGCTCGACGATCCAGGAACAGGAAATTTCAGTTGCAAGATAGACCCGACTGGATATCCCCAACTAATTTTGTACAATGGGAATGTCCCGCGATGGCGAGTAGGATCATGGACAGGGGAGAAATGGTCTGGAGTACCTGAAATGAGAAGATCGTTTATATTCAACACAACCTACATCGACAACACACAAGAGATTTCCATAATGGATGGCGTCACGACTGACACGGTTTTAACGAGCATGACTCTAGACGAATCCGGTTTGTTGCATCGGTCAACGTGGAGCGAGCAAGATAACAAATGGATCGATTATTGGTGGGCTCCGACTGAGTGGTGCGATACCTACAATCGATGCGATCCAAACACAAACTGTGACCAGTACGACACGGAGCAGTTCTATTGCAAGTGCTTGCCTGGGTTCGAACCACGATCGAACCAGAGTTGGTTATTGAGTAATCCGTCAGGTGGGTGCATTAGGAAGAGGCCTAACGCCATGTGTCGTAGTGGAGAGGGATTTGTGACGGTGTCACGCGTGAAGGTTCCGGATACGTCAATGGCAAGTGCGGATTTGAGTATGAGTTTAGAAGCATGCGCACAAGCATGTTTAAATGATTGTAACTGTACGGCTTACGCAAGCGCAAATGAGCTGACGGGGAGCGGGTGCTTGATGTGGCATGGAGATTTGATAGACACGCGGGCCTTTGCCAACACAGGTCAAGATCTACATGTAAGAGTTGATGCTATTGAATTAGCTCAATATACACAAAATTCTAATCGTCCTTCGACAAAGAAGGTGATAGTAATTGTTGTTGTGTCTGTTGTCGCGTTGGTGTTACTCGTGGCGTCGTTAATCTATGTATGGAAAATGGCTAGAAAAAGAAGGGAGAGATCGACGAGTTTATCTTATGATTTAGGGAACACTCTAAATCCAAATGAATTTGATGAAAGTAGAACAAAGTCAGATTTACCTATATTCGACTTGTTGACCATAGCAAAGGCAACTGACAATTTTTCACTTAATAACAAGCTTGGAAAAGGTGGCTTCGGTGCAGTTTATAAGGGGAAGCTTACAAATGGAGAGGAAATAGCAGTTAAAAGGTTGGCTAAAAATTCAGGGCAAGGAGTTGGAGAGTTCAAGAATGAAGTTAATTTAATTGCAAAGCTTCAACATAGAAACCTTGTCAAAATTTTAGGTTACTGCGTTAAAAATGAAGAGAAAATGATTGTGTATGAATACTTGCCAAACAAAAGCTTGGATACTTTCATCTTTGATGATAGCAAGAGAGCTTTGCTCAACTGGAAAAAACGTTTTGAAATTGTACGTGGCATTGCTCGAGGGATGCTATATCTTCATCAAGATTCTAGGTTGAAAATCATTCATCGAGATTTGAAGACAAGTAATATATTATTGGATGTTGATTTAAATCCCAAAATCGCGGATTTCGGTATGGCAAGAATATTTGGCCAAGATCAAATTCAAGCAAACACAGATCGTATTGTAGGAACATACGGTTATATGTCGCCAGAATATGCAATGGACGGTCTATTTTCAGTGAAATCCGATGTTTATAGTTTTGGAGTTCTGGTGCTAGAGATAATTACAGGCAAAAAGAACACTAGCTATGTATCCAACTACGTAAACTTGATTGGACAAGTTTGGGAGCTCTGGAAATTGAACAACGCAATGGAATTAGTAGATTCAAGTTTGGAAGGATCAAGCTTTGAGTATGAAATCACGAGATGCCTCCAAATTGGGCTATTATGTGTGCAAGAGGATCCGACTGATCGCCCCACCATGTCGACTGTCGTTTTTATGTTGGAAAATGAAGCGAATCTTCCTTGCCCAAAGAAACCTGCTTTCATTTTGAAAAGAAAAATCAGTGAAGGAGATCCATCCACTAGTACCAAGTCCAGTACCGAAGGAGTCAACTCTGTAAATGATCTAACAATTTCTGTAATTGCTGCTCGTTAG 2517 41.91 MHPLPPKPAVFLISLFLVIFVGTHFSIAIDTSNSTIQIIKDGDHLVSTNKNFTLGFFSLNNSTTPRYVGIWYSQIPQLTLVWVANRNQPLNHTSGTFALDPHGNVVLFTPTQTISLWSTNTTIQSNDDVSIELQNTGNLAFIERQSQKVIWQSFDYPSHVFLPYMKLGLNRQTGFSWFLTSWKALDDPGTGNFSCKIDPTGYPQLILYNGNVPRWRVGSWTGEKWSGVPEMRRSFIFNTTYIDNTQEISIMDGVTTDTVLTSMTLDESGLLHRSTWSEQDNKWIDYWWAPTEWCDTYNRCDPNTNCDQYDTEQFYCKCLPGFEPRSNQSWLLSNPSGGCIRKRPNAMCRSGEGFVTVSRVKVPDTSMASADLSMSLEACAQACLNDCNCTAYASANELTGSGCLMWHGDLIDTRAFANTGQDLHVRVDAIELAQYTQNSNRPSTKKVIVIVVVSVVALVLLVASLIYVWKMARKRRERSTSLSYDLGNTLNPNEFDESRTKSDLPIFDLLTIAKATDNFSLNNKLGKGGFGAVYKGKLTNGEEIAVKRLAKNSGQGVGEFKNEVNLIAKLQHRNLVKILGYCVKNEEKMIVYEYLPNKSLDTFIFDDSKRALLNWKKRFEIVRGIARGMLYLHQDSRLKIIHRDLKTSNILLDVDLNPKIADFGMARIFGQDQIQANTDRIVGTYGYMSPEYAMDGLFSVKSDVYSFGVLVLEIITGKKNTSYVSNYVNLIGQVWELWKLNNAMELVDSSLEGSSFEYEITRCLQIGLLCVQEDPTDRPTMSTVVFMLENEANLPCPKKPAFILKRKISEGDPSTSTKSSTEGVNSVNDLTISVIAAR* 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15254566 15257969 + Chy12G216030.1 Chy12g01003 238784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01003 838 Pfam PAN-like domain 348 413 IPR003609 -
Chy12g01003 838 Pfam Domain of unknown function (DUF3403) 790 838 IPR021820 GO:0004674
Chy12g01003 838 SMART blect_4 36 157 IPR001480 -
Chy12g01003 838 ProSiteProfiles PAN/Apple domain profile. 348 428 IPR003609 -
Chy12g01003 838 ProSiteProfiles Bulb-type lectin domain profile. 30 154 IPR001480 -
Chy12g01003 838 CDD PAN_AP_plant 349 427 - -
Chy12g01003 838 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Chy12g01003 838 CDD STKc_IRAK 525 790 - -
Chy12g01003 838 Gene3D Phosphorylase Kinase; domain 1 493 594 - -
Chy12g01003 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Chy12g01003 838 SMART ntp_6 349 427 IPR003609 -
Chy12g01003 838 Gene3D Transferase(Phosphotransferase) domain 1 595 796 - -
Chy12g01003 838 PIRSF SRK 2 838 IPR024171 GO:0004674
Chy12g01003 838 Pfam Protein tyrosine and serine/threonine kinase 520 786 IPR001245 GO:0004672|GO:0006468
Chy12g01003 838 Gene3D - 30 154 IPR036426 -
Chy12g01003 838 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 188 IPR036426 -
Chy12g01003 838 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 45 832 - -
Chy12g01003 838 ProSiteProfiles Protein kinase domain profile. 519 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01003 838 SUPERFAMILY Protein kinase-like (PK-like) 499 788 IPR011009 -
Chy12g01003 838 CDD B_lectin 37 157 IPR001480 -
Chy12g01003 838 SMART serkin_6 519 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01003 838 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544
Chy12g01003 838 Pfam D-mannose binding lectin 79 183 IPR001480 -
Chy12g01003 838 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKS1 45 832 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01001 Chy-Chr12:15238960 Chy12g01003 Chy-Chr12:15254566 0 dispersed
Chy12g01002 Chy-Chr12:15246395 Chy12g01003 Chy-Chr12:15254566 1.92E-42 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71628 PF07714 PK_Tyr_Ser-Thr 7.60E-51 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01003 - - csv:101213778 1655.19