Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01013 ATGTCAGCTTATTTGTGGAAAAGCTTCGACGAGGATGAAGATCGACCGGAGAAGCCTCGGCGATGTGGAGTTACAGAGATGAGAGGCCCTCATTACACTCTCTCCACCCAAAATATTATTCAGGAAATTTTCGAGTCCGTGGGTCAGTTTGTTGATGGGTTAAAGTTCTCCGGGGGTTCTCACAGCCTATTGCCGAGGGATTTTATGAAAGAGGTGACGGAAATGGCTCATCGACATGATGTCTATGTTAGTACGGGTGACTGGGCGGAGCATTTACTTCGTAAAGGTCCATCGGGTTTTAAAGAGTATGTGGAGGAATGTAAGCTCTTGGGGTTTGACACTATTGAACTCAACGTGGGATCACTTGATGTTCCTGAAGAAACTCTTCTGAGATATGTGCGCTTGATTAAGAACGGTGGCCTTAGGGCGAAGCCTCAGTTTGCAGTGAAGTTCAACAAGTCTGACATTCCCATCAGTGGCAATCGAGCATTTGGTGCTTATATTGTTCCAAAACCACGTTCTTCTGAACTTGTAGAAGATGTTGATCTTTTGATCAGAAGAGCTGAGAGATGCCTAGAAGCTGGGGCAGACATGATAATGATTGATGCAGATGATGTCAGTAAACACGCTGAGTTTCTCAGAGCAGATATTATTGCCAAGATCATTGGTCGCCTTGGTCTTGAGAAAACGATGTTTGAAGCATCGAATCCCCAAACATCAGAGTGGTTTATCAATCATTACGGCCCAAAGGTGAATCTTTTCGTGGATCACTCTCAAGTTATGGATCTGGAGTGCCTACGGGGCCGGAACCTGGGTCATGGAATTAGCATAAGAAGTTTGGAAAAATATAGCAAGGAAAAAGAAGTGGTAGGAGTGACGGTGAAAAAATGCAAGTTGACCAGTACTACAAACGGTATTAAGATCAAAAGATGGCCAGATTCTGTCGACACATTCCCAGCTACTGACATGCATTTTGAAGATATAGAAATGGTTAATGTCAGCAATCTTGTCCTCATAGACCAAGAATATTGTCCAAGGAACCAATGCAACCGAAAGGTTCCATAA 1065 43.76 MSAYLWKSFDEDEDRPEKPRRCGVTEMRGPHYTLSTQNIIQEIFESVGQFVDGLKFSGGSHSLLPRDFMKEVTEMAHRHDVYVSTGDWAEHLLRKGPSGFKEYVEECKLLGFDTIELNVGSLDVPEETLLRYVRLIKNGGLRAKPQFAVKFNKSDIPISGNRAFGAYIVPKPRSSELVEDVDLLIRRAERCLEAGADMIMIDADDVSKHAEFLRADIIAKIIGRLGLEKTMFEASNPQTSEWFINHYGPKVNLFVDHSQVMDLECLRGRNLGHGISIRSLEKYSKEKEVVGVTVKKCKLTSTTNGIKIKRWPDSVDTFPATDMHFEDIEMVNVSNLVLIDQEYCPRNQCNRKVP* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15394945 15400324 - Chy12G216130.1 Chy12g01013 238794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01013 354 MobiDBLite consensus disorder prediction 7 25 - -
Chy12g01013 354 SUPERFAMILY Pectin lyase-like 267 351 IPR011050 -
Chy12g01013 354 MobiDBLite consensus disorder prediction 1 26 - -
Chy12g01013 354 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 13 271 - -
Chy12g01013 354 Gene3D Aldolase class I 8 274 IPR013785 -
Chy12g01013 354 Pfam (2R)-phospho-3-sulfolactate synthase (ComA) 14 270 IPR003830 -
Chy12g01013 354 Pfam Glycosyl hydrolases family 28 271 352 IPR000743 GO:0004650|GO:0005975
Chy12g01013 354 PANTHER PROTEIN HEAT-STRESS-ASSOCIATED 32 13 271 - -
Chy12g01013 354 SUPERFAMILY (2r)-phospho-3-sulfolactate synthase ComA 13 267 IPR036112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01013 Chy-Chr12:15394945 Chy05g00144 Chy-Chr5:1113486 2.26E-40 dispersed
Chy12g01013 Chy-Chr12:15394945 Chy12g01014 Chy-Chr12:15401746 9.52E-45 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01013 - - csv:101208408 544.658