Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy12g01013 | ATGTCAGCTTATTTGTGGAAAAGCTTCGACGAGGATGAAGATCGACCGGAGAAGCCTCGGCGATGTGGAGTTACAGAGATGAGAGGCCCTCATTACACTCTCTCCACCCAAAATATTATTCAGGAAATTTTCGAGTCCGTGGGTCAGTTTGTTGATGGGTTAAAGTTCTCCGGGGGTTCTCACAGCCTATTGCCGAGGGATTTTATGAAAGAGGTGACGGAAATGGCTCATCGACATGATGTCTATGTTAGTACGGGTGACTGGGCGGAGCATTTACTTCGTAAAGGTCCATCGGGTTTTAAAGAGTATGTGGAGGAATGTAAGCTCTTGGGGTTTGACACTATTGAACTCAACGTGGGATCACTTGATGTTCCTGAAGAAACTCTTCTGAGATATGTGCGCTTGATTAAGAACGGTGGCCTTAGGGCGAAGCCTCAGTTTGCAGTGAAGTTCAACAAGTCTGACATTCCCATCAGTGGCAATCGAGCATTTGGTGCTTATATTGTTCCAAAACCACGTTCTTCTGAACTTGTAGAAGATGTTGATCTTTTGATCAGAAGAGCTGAGAGATGCCTAGAAGCTGGGGCAGACATGATAATGATTGATGCAGATGATGTCAGTAAACACGCTGAGTTTCTCAGAGCAGATATTATTGCCAAGATCATTGGTCGCCTTGGTCTTGAGAAAACGATGTTTGAAGCATCGAATCCCCAAACATCAGAGTGGTTTATCAATCATTACGGCCCAAAGGTGAATCTTTTCGTGGATCACTCTCAAGTTATGGATCTGGAGTGCCTACGGGGCCGGAACCTGGGTCATGGAATTAGCATAAGAAGTTTGGAAAAATATAGCAAGGAAAAAGAAGTGGTAGGAGTGACGGTGAAAAAATGCAAGTTGACCAGTACTACAAACGGTATTAAGATCAAAAGATGGCCAGATTCTGTCGACACATTCCCAGCTACTGACATGCATTTTGAAGATATAGAAATGGTTAATGTCAGCAATCTTGTCCTCATAGACCAAGAATATTGTCCAAGGAACCAATGCAACCGAAAGGTTCCATAA | 1065 | 43.76 | MSAYLWKSFDEDEDRPEKPRRCGVTEMRGPHYTLSTQNIIQEIFESVGQFVDGLKFSGGSHSLLPRDFMKEVTEMAHRHDVYVSTGDWAEHLLRKGPSGFKEYVEECKLLGFDTIELNVGSLDVPEETLLRYVRLIKNGGLRAKPQFAVKFNKSDIPISGNRAFGAYIVPKPRSSELVEDVDLLIRRAERCLEAGADMIMIDADDVSKHAEFLRADIIAKIIGRLGLEKTMFEASNPQTSEWFINHYGPKVNLFVDHSQVMDLECLRGRNLGHGISIRSLEKYSKEKEVVGVTVKKCKLTSTTNGIKIKRWPDSVDTFPATDMHFEDIEMVNVSNLVLIDQEYCPRNQCNRKVP* | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 15394945 | 15400324 | - | Chy12G216130.1 | Chy12g01013 | 238794 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy12g01013 | 354 | MobiDBLite | consensus disorder prediction | 7 | 25 | - | - | |
Chy12g01013 | 354 | SUPERFAMILY | Pectin lyase-like | 267 | 351 | IPR011050 | - | |
Chy12g01013 | 354 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Chy12g01013 | 354 | PANTHER | REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED | 13 | 271 | - | - | |
Chy12g01013 | 354 | Gene3D | Aldolase class I | 8 | 274 | IPR013785 | - | |
Chy12g01013 | 354 | Pfam | (2R)-phospho-3-sulfolactate synthase (ComA) | 14 | 270 | IPR003830 | - | |
Chy12g01013 | 354 | Pfam | Glycosyl hydrolases family 28 | 271 | 352 | IPR000743 | GO:0004650|GO:0005975 | |
Chy12g01013 | 354 | PANTHER | PROTEIN HEAT-STRESS-ASSOCIATED 32 | 13 | 271 | - | - | |
Chy12g01013 | 354 | SUPERFAMILY | (2r)-phospho-3-sulfolactate synthase ComA | 13 | 267 | IPR036112 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy12g01013 | Chy-Chr12:15394945 | Chy05g00144 | Chy-Chr5:1113486 | 2.26E-40 | dispersed | |
Chy12g01013 | Chy-Chr12:15394945 | Chy12g01014 | Chy-Chr12:15401746 | 9.52E-45 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy12g01013 | - | - | csv:101208408 | 544.658 |