Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01019 ATGGGGTCGCCTGAACTTACGGATTGGGTGTTCGATTACGGTGTGATTGAGGACATTCCTGTCCCCGGTGGTGACCTGCCTTCACTGGATCTTCCCTCTTTCACTTTGCCTTCTTGCGATTTCACTGCCTCCTTCAGGGAAGACTTTGATGAGCCACTTGGAATGGCAGAAGATGTAAAAGAATCTAGGTCCAGGAAAAGGATGAGCTCTGGATCACCAAATGCATTCGAGTCCAAGGCACGTAAAGAGAAAATGCGGAGGGATAAACTAAATGACAGGTTTCTGGAATTGAATTCCATCCTCAGTCATGGAAGGCCTCCCAAAATTGACAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATTATACAGCTAAGGGATGAGGCTCAGAAACTCAAGGAGTCTAATGAAAGTTCTTTGGAGAAAATTAATGAAATGAAGGCTGAAAAGAATGAACTACGAGATGAAAAACAAAGGTTGAAAGAAGCAAAAGATAGCCTTGAAAAGAAAATGAAGGGCTTTAATACACAACCAAGCTTCTTAACTCACCCTCCAGCAATTCCTGCTGGATTTTCTTCTCCAAATCAGATTGTTGGGGGGAAATTGGTACCTGTGATTGGATATCCAGGAGTATCCATGTGGCAGTTTATGCCTCCGGGAGCCATTGATACATCGCAAGACCACGTTCTTCGGCCACCAGTCGCCTGA 708 44.63 MGSPELTDWVFDYGVIEDIPVPGGDLPSLDLPSFTLPSCDFTASFREDFDEPLGMAEDVKESRSRKRMSSGSPNAFESKARKEKMRRDKLNDRFLELNSILSHGRPPKIDKSAILGDAVRMIIQLRDEAQKLKESNESSLEKINEMKAEKNELRDEKQRLKEAKDSLEKKMKGFNTQPSFLTHPPAIPAGFSSPNQIVGGKLVPVIGYPGVSMWQFMPPGAIDTSQDHVLRPPVA* 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15419503 15422270 + Chy12G216190.1 Chy12g01019 238800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01019 235 PANTHER BHLH TRANSCRIPTION FACTOR 4 235 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Chy12g01019 235 SMART finulus 80 131 IPR011598 GO:0046983
Chy12g01019 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983
Chy12g01019 235 Pfam Helix-loop-helix DNA-binding domain 78 125 IPR011598 GO:0046983
Chy12g01019 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 148 IPR036638 GO:0046983
Chy12g01019 235 Gene3D - 77 152 IPR036638 GO:0046983
Chy12g01019 235 CDD bHLH_AtILR3_like 79 154 - -
Chy12g01019 235 MobiDBLite consensus disorder prediction 57 85 - -
Chy12g01019 235 Coils Coil 122 177 - -
Chy12g01019 235 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 4 235 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00586 Chy-Chr11:6690012 Chy12g01019 Chy-Chr12:15419503 1.35E-69 dispersed
Chy12g01019 Chy-Chr12:15419503 Chy02g00573 Chy-Chr2:3449042 2.13E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18870 PF00010 HLH 2.00E-09 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01019 - - csv:101208894 461.07