Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy12g01019 | ATGGGGTCGCCTGAACTTACGGATTGGGTGTTCGATTACGGTGTGATTGAGGACATTCCTGTCCCCGGTGGTGACCTGCCTTCACTGGATCTTCCCTCTTTCACTTTGCCTTCTTGCGATTTCACTGCCTCCTTCAGGGAAGACTTTGATGAGCCACTTGGAATGGCAGAAGATGTAAAAGAATCTAGGTCCAGGAAAAGGATGAGCTCTGGATCACCAAATGCATTCGAGTCCAAGGCACGTAAAGAGAAAATGCGGAGGGATAAACTAAATGACAGGTTTCTGGAATTGAATTCCATCCTCAGTCATGGAAGGCCTCCCAAAATTGACAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATTATACAGCTAAGGGATGAGGCTCAGAAACTCAAGGAGTCTAATGAAAGTTCTTTGGAGAAAATTAATGAAATGAAGGCTGAAAAGAATGAACTACGAGATGAAAAACAAAGGTTGAAAGAAGCAAAAGATAGCCTTGAAAAGAAAATGAAGGGCTTTAATACACAACCAAGCTTCTTAACTCACCCTCCAGCAATTCCTGCTGGATTTTCTTCTCCAAATCAGATTGTTGGGGGGAAATTGGTACCTGTGATTGGATATCCAGGAGTATCCATGTGGCAGTTTATGCCTCCGGGAGCCATTGATACATCGCAAGACCACGTTCTTCGGCCACCAGTCGCCTGA | 708 | 44.63 | MGSPELTDWVFDYGVIEDIPVPGGDLPSLDLPSFTLPSCDFTASFREDFDEPLGMAEDVKESRSRKRMSSGSPNAFESKARKEKMRRDKLNDRFLELNSILSHGRPPKIDKSAILGDAVRMIIQLRDEAQKLKESNESSLEKINEMKAEKNELRDEKQRLKEAKDSLEKKMKGFNTQPSFLTHPPAIPAGFSSPNQIVGGKLVPVIGYPGVSMWQFMPPGAIDTSQDHVLRPPVA* | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 15419503 | 15422270 | + | Chy12G216190.1 | Chy12g01019 | 238800 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy12g01019 | 235 | PANTHER | BHLH TRANSCRIPTION FACTOR | 4 | 235 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 | |
Chy12g01019 | 235 | SMART | finulus | 80 | 131 | IPR011598 | GO:0046983 | |
Chy12g01019 | 235 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 74 | 125 | IPR011598 | GO:0046983 | |
Chy12g01019 | 235 | Pfam | Helix-loop-helix DNA-binding domain | 78 | 125 | IPR011598 | GO:0046983 | |
Chy12g01019 | 235 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 81 | 148 | IPR036638 | GO:0046983 | |
Chy12g01019 | 235 | Gene3D | - | 77 | 152 | IPR036638 | GO:0046983 | |
Chy12g01019 | 235 | CDD | bHLH_AtILR3_like | 79 | 154 | - | - | |
Chy12g01019 | 235 | MobiDBLite | consensus disorder prediction | 57 | 85 | - | - | |
Chy12g01019 | 235 | Coils | Coil | 122 | 177 | - | - | |
Chy12g01019 | 235 | PANTHER | TRANSCRIPTION FACTOR ILR3-LIKE | 4 | 235 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy11g00586 | Chy-Chr11:6690012 | Chy12g01019 | Chy-Chr12:15419503 | 1.35E-69 | dispersed | |
Chy12g01019 | Chy-Chr12:15419503 | Chy02g00573 | Chy-Chr2:3449042 | 2.13E-14 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18870 | PF00010 | HLH | 2.00E-09 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy12g01019 | - | - | csv:101208894 | 461.07 |