Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01045 ATGCAACATTACTATCATGTTAAGAAAACCCCCCTCCATGCATCCTGTGTAGATGCAGTTCAGAAAGTGTACTGTACCAATATGATATACGAATGTATTTTAGAAATCCTTAGAGATCATCTAAGAAGGGAAGCCATGTTTGGAGCTCATGGATTTGAAGATCATCATCATCAGGATGATCTTCTACTGGAGATGACACAGAAAAATTTCGAAACCGAACTCGAAAAATTTGGAGAAGATGAGTTTGAGAGTAGGTCGGTGACCGATGCCATGGATGCTCCTTTGGGAGAAGAACAATGTGATCTTTTGAATCAGAGAAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATTCAGGAAATGGAAGCGTTTTTTAAGGAATGTCCACATCCAGATGACAAGCAAAGAAAACAGCTTAGCCGTGAGCTAGGACTCGAACCTCTCCAAGTCAAGTTCTGGTTTCAAAACAAGCGCACCCAAATCAAGGCTCAACAAGAACGGCATGAGAATGCAATATTGAAAGCTCAAAACGAGAAATTAAGAGCAGAGAACATGAGGTATAAGGAAGCTCTTTCCAATACAAGTTGCCCTAATTGTGGAGGTCCTGCTGCTCTTGGTGAGATGTCCTTTGATGCTCAACATTTGAGAATCGACAATGCACATCTAAGAGACGAGATTGAAAGATTAAACGGTAATAACAAATATGGTGGGAAGGGATGGGGTTCCCATTCTTCGCATATAGTTTCATGTGGAGGGCAGGTTGGAAGGTCATCATTAAAGCCTCAACAATTGCAAGGAGATGATCATTTGTTAGGGGATATGTATGGAGAGACGACAACAGGGATGATGTTAAAATCGTCGTCAGTTACAACTGAAATTGATAAGCCAGTCATTGTTGAGCTTGCAGTTTCAGCCATGGAAGAAGTATGTAGAATGGCTCAAGAAGGTGAGCCATTGTGGGTTGTTGGTGAAAACTCCATGGAAATGCTTAATGAAGATGAGTACTTGAGGACTTACTCTACACGAATAGGCCCTAGAATTGTGGGACTAACCTCTGAAGCTTCAAGACAAACTTCTATTCTTGCTTTCAATCATTTAAAACTTGTCCATATTCTCATGGACGTGAATCAATGGTCAACCATATTTTGCGGAATTGTTTCAAGAGCATTGACACTCGAAGTCTTATCAAGTGGAGTTGGTGGCGACTATAATGGAGCTCTACAAGTCATGACGGCGGAGTTTCAAGTTCCATCTCCATTGGTTCCGACGAGAGAAAATTACTTCGTGAGATATTGCAAGCAGCAGGGAGAGGGGAGTTGGGCTGTGGTAGATGTTTCACTTGATTATTTACGTCCTACTCCTACTTCAAGGACTCGAAGACGACCATCTGGTTGCTTAATCCAAGAACTTCCTAATGGTTACTCAAAGGTGACTTGGGTAGAACATGTAGAAGTGGATGATCGAGCAGTACACAGTTTATACAAAGGAGTGGTGACATGTGGGCTTGCCTTTGGCGCAAAACGATGGATGGCTACTCTTGGTCGACAATGCCAACGCCTAACCAACTCTTCTTCTACCAATATTCCTGCACTTGACATTTGTGTTGTAACGGGGCAAGAGGGGAGGAAGAGCGTTATGAAGTTAGCTGAGAGAATGGTGAGGAGCTTCTGCAGTGGCGTTGGGGCTGCTACTGCACATAATTGGACCACATTATCCACCATTGATTCCGATGATGTTCGAGTCATGGCCAGAAAGAGCCTCGACGACCCTGGCCGACCTCCTGGAATTGTTCTTAATGCAGCTACTTCTTTCTGGATCCCGATTCCCCCTAATAGGGTCTTCAATTTCCTCCGAGATCAAAACACCCGCAATCAGTGGGATATACTTTCAAATGGTGGATTAGTTCAAGAAATGGCTCGCATTGGCAACGATCGAAAATCAGGAAACTGTGTCTCATTACTTCGTGTTAACAGTGCAAATTCAAGTCAGAGCAACATGTTGATACTACAAGAGAGTTGCAGCGACGACATCAGCGGTTCCTACATTATCTACGCACCGGTGGACACCGCGGCCATGAACATGGTTTTAAGCGGCGGTGACCCTGATTACGTGGCTCTCTTGCCATCTGGATTTGCCATACTTCCTGATGGACCGCCAATTGGGCCTGAGGGGCCTCCAGGAATTCTCGAGTTCGGCTCCGGTGGTTCCTTGTTGACGGTTGCTTTTCAGATATTGGTAGATTCTGTTCCAACTGCCAAATTGTCTCTTGGCTCGGTGGCCACCGTCAACAGCCTCATCAAGTGCACGGTGGAGCGAATTAGAGCTGCACTCATGTGTGACCAACCCATCAATTAA 2361 44.52 MQHYYHVKKTPLHASCVDAVQKVYCTNMIYECILEILRDHLRREAMFGAHGFEDHHHQDDLLLEMTQKNFETELEKFGEDEFESRSVTDAMDAPLGEEQCDLLNQRNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQIKAQQERHENAILKAQNEKLRAENMRYKEALSNTSCPNCGGPAALGEMSFDAQHLRIDNAHLRDEIERLNGNNKYGGKGWGSHSSHIVSCGGQVGRSSLKPQQLQGDDHLLGDMYGETTTGMMLKSSSVTTEIDKPVIVELAVSAMEEVCRMAQEGEPLWVVGENSMEMLNEDEYLRTYSTRIGPRIVGLTSEASRQTSILAFNHLKLVHILMDVNQWSTIFCGIVSRALTLEVLSSGVGGDYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQQGEGSWAVVDVSLDYLRPTPTSRTRRRPSGCLIQELPNGYSKVTWVEHVEVDDRAVHSLYKGVVTCGLAFGAKRWMATLGRQCQRLTNSSSTNIPALDICVVTGQEGRKSVMKLAERMVRSFCSGVGAATAHNWTTLSTIDSDDVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFNFLRDQNTRNQWDILSNGGLVQEMARIGNDRKSGNCVSLLRVNSANSSQSNMLILQESCSDDISGSYIIYAPVDTAAMNMVLSGGDPDYVALLPSGFAILPDGPPIGPEGPPGILEFGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIRAALMCDQPIN* 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15645774 15653295 + Chy12G216450.1 Chy12g01045 238826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01045 786 Coils Coil 214 234 - -
Chy12g01045 786 SMART START_1 302 521 IPR002913 GO:0008289
Chy12g01045 786 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Chy12g01045 786 CDD homeodomain 108 167 IPR001356 GO:0003677
Chy12g01045 786 CDD START_ArGLABRA2_like 297 520 - -
Chy12g01045 786 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Chy12g01045 786 Pfam START domain 303 521 IPR002913 GO:0008289
Chy12g01045 786 Pfam Homeodomain 109 164 IPR001356 GO:0003677
Chy12g01045 786 Gene3D - 97 183 - -
Chy12g01045 786 ProSiteProfiles START domain profile. 293 524 IPR002913 GO:0008289
Chy12g01045 786 Coils Coil 160 195 - -
Chy12g01045 786 Gene3D - 369 516 IPR023393 -
Chy12g01045 786 SUPERFAMILY Bet v1-like 293 522 - -
Chy12g01045 786 SUPERFAMILY Homeodomain-like 96 167 IPR009057 -
Chy12g01045 786 SMART HOX_1 107 170 IPR001356 GO:0003677
Chy12g01045 786 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 71 782 - -
Chy12g01045 786 SUPERFAMILY Bet v1-like 548 776 - -
Chy12g01045 786 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 71 782 IPR042160 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00599 Chy-Chr11:6948159 Chy12g01045 Chy-Chr12:15645774 0 dispersed
Chy11g02014 Chy-Chr11:25991815 Chy12g01045 Chy-Chr12:15645774 0 dispersed
Chy12g01045 Chy-Chr12:15645774 Chy12g01582 Chy-Chr12:19332505 0 dispersed
Chy01g00419 Chy-Chr1:2952449 Chy12g01045 Chy-Chr12:15645774 0 wgd
Chy12g01045 Chy-Chr12:15645774 Chy02g00386 Chy-Chr2:2460284 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18871 PF01852 START 2.60E-49 CL0209 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01045 K09338 - csv:101212604 1454.11