Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01065 ATGTCTTGTTCGAATCTGACTATGTGGGTGTCTTCAAAACCCACCGTTTCTGATGCATCCTCCCTGTCTTTCCGCTCATTTTTGAGCCCTTTTCAACTTCCTTCCCAGAATTCAACCCCTGCTCGATCATGGTCAGTTACTCCAATCCATTGCGGTCTTCGGGAACTCCGAGACCGTATCGATTCGGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCTAAAGTCCGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCCTTCTCTGAAGCCTTAGTTGAAGTCCTTTACAACATCAATGAGCAACTTCAAACAGAAGACGTTGATGTTCCTTTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTAGTTGTTGTCACCGGTGATAGAGGTCTTTGTGGTGGTTTCAACAATAACATCATTAAGAAAGCTGAAGCTAGAATATCAGAATTGAAGGCACTTGGTCTTGATTACACTGTCATTAGTGTTGGAAAGAAGGGTAATTCTTATTTCCTTCGCCGACCGTACATTCCTGTCGATAAGTTCCTTGAAGGTGGTACTCTTCCCACTGCTAAAGAAGCTCAAGCGATAGCTGATGATGTTTTTTCACTCTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTATACGAAATTCGTGTCATTGGTAAAATCTGATCCTGTAATTCATACTCTTCTTCCTCTATCACCAAAAGGTGAGATCTGTGATATAAATGGAGTCTGTGTAGATGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGGAAATTGACAGTAGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTTTCACCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTTTGTATTTGAACAGCCAGATTTTGAGGGCATTGCAAGAGTCATTGGCCAGTGAACTTGCTGCTAGAATGAGTGCTATGAGTAATGCAACCGATAATGCTTCTGAGCTGAAGAGAACTCTGTCTATTGTGTATAATAGACAGCGCCAAGCTAAGATTACTGGAGAAATCTTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA 1122 41.62 MSCSNLTMWVSSKPTVSDASSLSFRSFLSPFQLPSQNSTPARSWSVTPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARISELKALGLDYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15792888 15794009 + Chy12G216650.1 Chy12g01065 238846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01065 373 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 52 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy12g01065 373 Gene3D ATP synthase, gamma subunit, helix hairpin domain 269 372 - -
Chy12g01065 373 Hamap ATP synthase gamma chain [atpG]. 50 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy12g01065 373 Gene3D ATP synthase, gamma subunit, helix hairpin domain 52 119 - -
Chy12g01065 373 Gene3D - 120 243 - -
Chy12g01065 373 Pfam ATP synthase 53 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy12g01065 373 PANTHER ATP SYNTHASE GAMMA CHAIN 1 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy12g01065 373 PRINTS ATP synthase gamma subunit signature 319 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy12g01065 373 PRINTS ATP synthase gamma subunit signature 124 143 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy12g01065 373 PRINTS ATP synthase gamma subunit signature 350 371 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy12g01065 373 PRINTS ATP synthase gamma subunit signature 217 234 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy12g01065 373 CDD F1-ATPase_gamma 53 369 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy12g01065 373 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 52 372 IPR035968 GO:0015986|GO:0045261|GO:0046933
Chy12g01065 373 ProSitePatterns ATP synthase gamma subunit signature. 358 371 IPR023632 -
Chy12g01065 373 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01816 Chy-Chr6:21860343 Chy12g01065 Chy-Chr12:15792888 6.37E-156 dispersed
Chy12g01502 Chy-Chr12:18836503 Chy12g01065 Chy-Chr12:15792888 5.89E-26 transposed
Chy12g01065 Chy-Chr12:15792888 Chy02g00399 Chy-Chr2:2536085 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01065 K02115 - csv:101214408 685.641