Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01100 ATGGCCTCAAAATCTTCCAACCTTCTACTAATGCTTCTCTTCATTCTCTCACTCATCAATCTCTCCCTCCAAGATTACTACACTCCCGACAAGAAAAACATGAACGTAATCGATTCGTGCTGGCGTCAAACCTCCAATTGGGCCAAAAACCGAAAAGCCTTAGCCGACTGTGCAGTTGGCTACGGCAAGGACGCAATCGGAGGCAAATTTGGCACCATTTACACTGTCACTGACCCATCTGACAACCCTTCAAACCCTAAATACGGAACGCTACGTTACGGTGTGATCCAAGACAAGCCATTGTGGATTGTGTTTGGGAAGGACATGGTGATTGTGTTGAAGAATGAGCTGATGGTAAATAGTTTCAAGACCATAGATGGACGTGGGGCTAAAGTGGAAATTGCTTATGGGCCTTGTATTACGGTGCAAGGGGTTAGCCATGTTATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGGAAAGCTGGTCTCGTTAGAGACACTATATCGCATGTTGGGAAACGGAAAGGGTCTGATGGTGATGCTATTGCTGTGTTTAGTTCTTCACATGTTTGGATTGATCATTGTTATTTAGCACGATGTACTGATGGTCTTATTGATGTTATTCATGCTTCCACTTCTGTCACTATCTCAAATAACTACTTCTCTCAACATGATAAGGTGATGCTGCTTGGACATAATGATGGGTTCACTGATGATAAAATTATGAGGGTCACCATTGTTTTCAACCGCTTTGGTGCTGGTCTCATTGAGAGGATGCCCAGGGTTAGGTTTGGTTATGCCCATGTAGCCAACAATAGATACGACGAGTGGAAAATGTATGCCATTGGTGGGAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCAAAATCATTATGCCAAACAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAATTGGAAATGGAGATCCTCCAGAGATGTGTTCTTAAATGGTGCTTATTTTGTGCCATCAGGATGGGGAAGCTGCAGCCCAATTTATACAAAAGCTCAGTCCTTTCCAGTGGCTCCTGGCTCTATGGTTCCTGCTTTGACTGCAAACGCCGGTCCACTCCGTTGTTTTATCGGCAAACCTTGCTAA 1146 43.89 MASKSSNLLLMLLFILSLINLSLQDYYTPDKKNMNVIDSCWRQTSNWAKNRKALADCAVGYGKDAIGGKFGTIYTVTDPSDNPSNPKYGTLRYGVIQDKPLWIVFGKDMVIVLKNELMVNSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKAGLVRDTISHVGKRKGSDGDAIAVFSSSHVWIDHCYLARCTDGLIDVIHASTSVTISNNYFSQHDKVMLLGHNDGFTDDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPQNHYAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCSPIYTKAQSFPVAPGSMVPALTANAGPLRCFIGKPC* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16015940 16017622 + Chy12G217000.1 Chy12g01100 238881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01100 381 Gene3D - 34 374 IPR012334 -
Chy12g01100 381 PANTHER PECTATE LYASE 16-RELATED 24 379 - -
Chy12g01100 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Chy12g01100 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Chy12g01100 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Chy12g01100 381 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Chy12g01100 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Chy12g01100 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Chy12g01100 381 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Chy12g01100 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Chy12g01100 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
Chy12g01100 381 PANTHER PECTATE LYASE 18-RELATED 24 379 IPR045032 GO:0030570
Chy12g01100 381 Pfam Pectate lyase 115 299 IPR002022 -
Chy12g01100 381 SMART amb_all 108 305 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01100 Chy-Chr12:16015940 Chy12g01211 Chy-Chr12:16852088 1.98E-149 dispersed
Chy12g01566 Chy-Chr12:19226884 Chy12g01100 Chy-Chr12:16015940 8.19E-108 transposed
Chy12g01100 Chy-Chr12:16015940 Chy02g00418 Chy-Chr2:2640386 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01100 K01728 - csv:101211379 758.829