Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01128 ATGGCTCCGACAGAGGTGAAAACGCTATTTCTTTCTCTTTTCGTGTTGATTTGGTTGTCCAGAATGGGCGTCTCTGATACTATGTTTAACGAGTCAGGAATTGGGTATTCGGTTGTTTCCAGAAAGGAAATTTCAAAAGGACGGTGCCCACATGGTTGGATTATTAGCCCAAGCAAGACTAAGTGCTTTGGTTTCATGTCCAGCCCTAAATCATGGAATGATTCAGAGACCCAATGTAATAGTTTTGGAGGGAACTTAGCAGCTCTGGTAACATATCAAGAGTTTAGCTATGCACAAAATCTGTGTAATGGAACTCTTGGTGGCTGTTGGGTTGGTGGCAGAGCGTTCAACTCTTTGAATGATTTCGTTTGGAAATGGTCAGATAATGTTTCGAAATGGAACGATTCCATTTTTCCCAGCGCAACTTTGCAATCGAACTGCAAAAATGCCTCTTGCCACCAGAATGATTCGGTTGAAACATGTACTTTAATATTTGGTGGACCAGCAACACCATTCCTTAGGGACGAGAAATGCCACATTTCTCACCCTTTTATATGCATGATAAACCTAGATGATAGATGCCATCGAATGCACTGTCACAAGGAGTATCTAGTTATTCTAGCTGTTGTGAGTGGGTTGATATTTTGCACAACTTTAGCTGTGGTGATTTGGCTTCTAGCCCACAAGAGGAGCAAAAAGCGGAGAAGGTCGCGGAAGCCATCCAACCCAGCGGCTTCTGCACTGGTACCGCCTTTGTGGAGGGTGTTTACCAAAGAAGAGCTAAGATCAATGACAAAAAACTTCAGTGAGGGAAACCGTCTTCTTGGAGATGCAAAAACAGGCGGTACATACAGTGGACTTCTACCTGATGGTTCAAGAGTTGCAATTAAAAGGTTGAAGAAGTCCAGCTTTCAGAGGAAAAAGGAGTTCCATTCAGAAATTGCAAGAGTTGCTAGACTTCGTCACCCAAATTTAGTTGCCCTGAAAGGATGCTGCTATGACCATGGTGACCGCTACATTGTTTATGAATTCATTGTTAATGGGCCCTTAGATAGATGGCTTCATCATGTACCAAGAGGTGGTCGAAGCTTAGATTGGACTATGAGAATGAAAATTGCCACGACTCTTGCTCAAGGGATTGCGTTCCTTCACGACAAGGTCAAACCACACGTGGTACATCGTGATATCCGTGCGAGTAATGTGCTTCTCGATGAAGAATTTGGAGCACATCTAATGGGAGTTGGCCTATCGAAATTGGTCGCATATGAAGTGATGCATGAGAGGACAGTGATGGCAGGAGGAACCTATGGATACCTTGCTCCTGAATTTGTCTACAGAAACGAGCTAACAACAAAGAGTGATGTCTACAGTTTTGGGGTCCTATTGCTTGAAATTGTAACCGGACGAAGGCCCGCACAGGCAGTTGATTCAGTTGGTTGGCAGAGCATTTTTGAATGGGCAACCCCTCTCGTGCAAGCTCACCGTTACCTAGATCTCTTGGATCCTCATATAACAGCCACTTCAACTTCTGAAATCCCAGAGGCTGGCATTGTTCAAAAGGTTGTGGACCTTGTTTATGCTTGCACACAGCACGTCCCGTCCATGCGACCTAGAATGTCACACGTCGTTCATCAACTGCAACAATTGGCTCCCTCACCTCTCACTACGAAGTAA 1674 44.5 MAPTEVKTLFLSLFVLIWLSRMGVSDTMFNESGIGYSVVSRKEISKGRCPHGWIISPSKTKCFGFMSSPKSWNDSETQCNSFGGNLAALVTYQEFSYAQNLCNGTLGGCWVGGRAFNSLNDFVWKWSDNVSKWNDSIFPSATLQSNCKNASCHQNDSVETCTLIFGGPATPFLRDEKCHISHPFICMINLDDRCHRMHCHKEYLVILAVVSGLIFCTTLAVVIWLLAHKRSKKRRRSRKPSNPAASALVPPLWRVFTKEELRSMTKNFSEGNRLLGDAKTGGTYSGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVARLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLHHVPRGGRSLDWTMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITATSTSEIPEAGIVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTTK* 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16253161 16255597 - Chy12G217280.1 Chy12g01128 238909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01128 557 ProSiteProfiles C-type lectin domain profile. 58 187 IPR001304 -
Chy12g01128 557 ProSiteProfiles Protein kinase domain profile. 269 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01128 557 PANTHER - 9 550 - -
Chy12g01128 557 Pfam Protein tyrosine and serine/threonine kinase 275 546 IPR001245 GO:0004672|GO:0006468
Chy12g01128 557 SUPERFAMILY Protein kinase-like (PK-like) 242 546 IPR011009 -
Chy12g01128 557 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 550 - -
Chy12g01128 557 CDD CLECT 61 186 - -
Chy12g01128 557 Pfam Lectin C-type domain 69 187 IPR001304 -
Chy12g01128 557 Gene3D Transferase(Phosphotransferase) domain 1 345 551 - -
Chy12g01128 557 SMART CLECT_2 49 187 IPR001304 -
Chy12g01128 557 Gene3D - 36 190 IPR016186 -
Chy12g01128 557 SMART tyrkin_6 268 546 IPR020635 GO:0004713|GO:0006468
Chy12g01128 557 Gene3D Phosphorylase Kinase; domain 1 248 344 - -
Chy12g01128 557 SUPERFAMILY C-type lectin-like 49 188 IPR016187 -
Chy12g01128 557 ProSitePatterns Tyrosine protein kinases specific active-site signature. 391 403 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01128 Chy-Chr12:16253161 Chy05g00533 Chy-Chr5:5723517 1.65E-62 dispersed
Chy12g01128 Chy-Chr12:16253161 Chy05g01369 Chy-Chr5:17799292 4.90E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71632 PF07714 PK_Tyr_Ser-Thr 4.30E-40 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01128 - - csv:101218425 1122.84